BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0051.p (518 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 778 0.0 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 539 e-154 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 488 e-139 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 486 e-138 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 442 e-125 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/484 (84%), Positives = 438/484 (90%) Query: 1 MNILGNMNIGKRLTLGFAVILAFSAIVAGISLWRLEQVSTATREMMNDPLKTERLMGDWY 60 MNI+GNMNIG+RLTLGFA+IL FS I+AGI LWRL+ V+ ATREMM +PLKTERLM DWY Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 TNLTAGIRRTLAIAKSSDPSLAAYFAEEAAASTKSSSEYQKQVEGLLVTPEEKALFQKIG 120 TNL AGIRRT+AIAKSSDP+L YFA E AAS+KSS EYQKQVE LL TPEEKALFQKIG Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 EQRKVYLSSRDQIVKLKAAGNVEEAMRLLETTFVPTAATYQKLMREMVDIQRKDIDDTAK 180 E RK+YLSSRD+I K KAAGN EEAMR+L+ FVP A YQ MR++VD QRK++DDTA+ Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 181 EIDNIAAQSRILIVVLEGLILLLGIVLARTLTLGITKPLQTAVVVSRKVAEGDLATQVQV 240 EID IAA+SR LI+VLEGLILLLGIV AR LTLGITKPL AV VSR VAEGDL++++ V Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAV 240 Query: 241 TSRDETGQLLQSLKDMNDSLRGIVANVRTGTDTISTASAEIAAGNLDLSGRTEQQASSLE 300 TSRDETGQLLQSLKDMN SLRGIV+NVR+GTDTISTAS+EIAAGNLDLS RTEQQASSL Sbjct: 241 TSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLA 300 Query: 301 ETASAMEELISTVRQNADNARQASQLAQSASSVAEQGGGVVSQVVDTMGAINASSRKIVD 360 ETASAMEELISTVRQNADNARQASQLA SAS+VAEQGGGVVSQVVDTMGAINASSRKIVD Sbjct: 301 ETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIND 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIKELIND Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIND 420 Query: 421 SVEKVGDGSRLVEQAGVTMQEVVSSVRHVTDIVAEISAASAEQTSGIEQINLAITQMDQV 480 SV KV DGSRLVEQAG TMQEVVSSVR VTDIVAEISAAS EQT GIEQINLAITQMDQV Sbjct: 421 SVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQV 480 Query: 481 TQQN 484 TQQN Sbjct: 481 TQQN 484 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 539 bits (1388), Expect = e-154, Method: Compositional matrix adjust. Identities = 304/487 (62%), Positives = 374/487 (76%), Gaps = 3/487 (0%) Query: 1 MNILGNMNIGKRLTLGFAVILAFSAIVAGISLWRLEQVSTATREMMNDPLKTERLMGDWY 60 M NM IG+RL LGFAVILA +++V +S+WRL+ ++ AT EMM++PL ERL+ DWY Sbjct: 1 MRYFANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWY 60 Query: 61 TNLTAGIRRTLAIAKSSDPSLAAYFAEEAAASTKSSSEYQKQVEGLLVTPEEKALFQKIG 120 + +RRT AIAKSSDPSLAA+FA++AAA+++ S+E QK +E L+ + +EKA+F K+G Sbjct: 61 RTIHTSVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLG 120 Query: 121 EQRKVYLSSRDQIVKLKAAGNVEEAMRLLETTFVPTAATYQKLMREMVDIQRKDIDDTAK 180 E RK Y+ RD I K KA G EEA ++L F Y L+++++ +QR +ID A Sbjct: 121 EVRKDYIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAA 180 Query: 181 EIDNIAAQSRILIVVLEGLILLLGIVLARTLTLGITKPLQTAVVVSRKVAEGDLATQV-- 238 I + +SR L++ L L ++LG + ARTL LGIT+PL+ AV V+ VA GDL ++ Sbjct: 181 HIQTVYRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDE 240 Query: 239 QVTSR-DETGQLLQSLKDMNDSLRGIVANVRTGTDTISTASAEIAAGNLDLSGRTEQQAS 297 ++ +R DETG+L+ +L M +L IV VR GTD I+TAS EIA GNLDLS RTE+QA Sbjct: 241 RLAARGDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAG 300 Query: 298 SLEETASAMEELISTVRQNADNARQASQLAQSASSVAEQGGGVVSQVVDTMGAINASSRK 357 +LEETASAMEEL STV QNADNARQA+QLA SASSVA+QGG VVSQV+ TMG+IN SSRK Sbjct: 301 ALEETASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRK 360 Query: 358 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKEL 417 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK L Sbjct: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKAL 420 Query: 418 INDSVEKVGDGSRLVEQAGVTMQEVVSSVRHVTDIVAEISAASAEQTSGIEQINLAITQM 477 I+DSV KVG GS LV +AG TM EVV+SVR V DIV+EISAAS+EQ+ GI Q+NLAIT M Sbjct: 421 IDDSVAKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDM 480 Query: 478 DQVTQQN 484 DQ TQQN Sbjct: 481 DQTTQQN 487 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 488 bits (1256), Expect = e-139, Method: Compositional matrix adjust. Identities = 266/482 (55%), Positives = 346/482 (71%) Query: 3 ILGNMNIGKRLTLGFAVILAFSAIVAGISLWRLEQVSTATREMMNDPLKTERLMGDWYTN 62 ++ ++ IG RL GFAV+L FS +VA + +WRL+ V+ T++MM+ PLKTERL+ W T Sbjct: 1 MIKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTL 60 Query: 63 LTAGIRRTLAIAKSSDPSLAAYFAEEAAASTKSSSEYQKQVEGLLVTPEEKALFQKIGEQ 122 L I+RT + KS DP L A+ A+EAAAS+K S++ K VE LL + EEK +F I Sbjct: 61 LLIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVA 120 Query: 123 RKVYLSSRDQIVKLKAAGNVEEAMRLLETTFVPTAATYQKLMREMVDIQRKDIDDTAKEI 182 RK +L+ RDQI K G+ + L + +V A + Q MR ++D +R ID + +I Sbjct: 121 RKQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQI 180 Query: 183 DNIAAQSRILIVVLEGLILLLGIVLARTLTLGITKPLQTAVVVSRKVAEGDLATQVQVTS 242 A+ S+ I++LE +ILL GI A LT IT+P+ A+ +S++VA GDL ++ Q Sbjct: 181 QQDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMG 240 Query: 243 RDETGQLLQSLKDMNDSLRGIVANVRTGTDTISTASAEIAAGNLDLSGRTEQQASSLEET 302 RDE GQL+ SL+ M++ L G+V+ VR G D+I+ AS EIA GNLDLS RTE+QA +LE+T Sbjct: 241 RDELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGALEQT 300 Query: 303 ASAMEELISTVRQNADNARQASQLAQSASSVAEQGGGVVSQVVDTMGAINASSRKIVDII 362 A+++EEL S+VR N+DNA QA++L +A+SVA QGG V+ Q++ TM IN SSRKIVDII Sbjct: 301 AASIEELTSSVRTNSDNAHQANELVSTAASVAGQGGAVMDQLISTMATINDSSRKIVDII 360 Query: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELINDSV 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK+LI+DSV Sbjct: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 Query: 423 EKVGDGSRLVEQAGVTMQEVVSSVRHVTDIVAEISAASAEQTSGIEQINLAITQMDQVTQ 482 KV GS LVEQAG TMQEVV SV+ +V EIS AS +Q GI Q+N A+ QMD VTQ Sbjct: 421 GKVSAGSTLVEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMDGVTQ 480 Query: 483 QN 484 QN Sbjct: 481 QN 482 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 486 bits (1250), Expect = e-138, Method: Compositional matrix adjust. Identities = 267/481 (55%), Positives = 333/481 (69%) Query: 4 LGNMNIGKRLTLGFAVILAFSAIVAGISLWRLEQVSTATREMMNDPLKTERLMGDWYTNL 63 + N+ IG RL +GF +L A++ + +WRL + AT +M LK ER W+ + Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 64 TAGIRRTLAIAKSSDPSLAAYFAEEAAASTKSSSEYQKQVEGLLVTPEEKALFQKIGEQR 123 RT A+ KS D + AYF ++ A + S+ QK+VE + EEK LF ++G+ R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 124 KVYLSSRDQIVKLKAAGNVEEAMRLLETTFVPTAATYQKLMREMVDIQRKDIDDTAKEID 183 Y ++R I +K AG+ A + +TT V Y + D Q++ ID TA I+ Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 184 NIAAQSRILIVVLEGLILLLGIVLARTLTLGITKPLQTAVVVSRKVAEGDLATQVQVTSR 243 R +++ L + ++LG LA LT IT+PL AV ++ VA GDL +++ +SR Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 244 DETGQLLQSLKDMNDSLRGIVANVRTGTDTISTASAEIAAGNLDLSGRTEQQASSLEETA 303 DETG+LL +LK MN +L IV VR GT+TI+TAS EIA GNLDLS RTE QA SLEETA Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETA 300 Query: 304 SAMEELISTVRQNADNARQASQLAQSASSVAEQGGGVVSQVVDTMGAINASSRKIVDIIS 363 SAME+L STV+QNADNARQA++LA SAS VA QGG VV QVV TMGAI+ASS+KI DII Sbjct: 301 SAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIG 360 Query: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELINDSVE 423 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK+LI+DSVE Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVE 420 Query: 424 KVGDGSRLVEQAGVTMQEVVSSVRHVTDIVAEISAASAEQTSGIEQINLAITQMDQVTQQ 483 KV DGSRLV +AG TMQEVV SV VT +V EI+ AS EQ+ GIEQ+NLAIT +D+ TQQ Sbjct: 421 KVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQ 480 Query: 484 N 484 N Sbjct: 481 N 481 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 442 bits (1137), Expect = e-125, Method: Compositional matrix adjust. Identities = 259/494 (52%), Positives = 333/494 (67%), Gaps = 20/494 (4%) Query: 1 MNILGNMNIGKRLTLGFAVILAFSAIVAGISLWRLEQVSTATREMMNDPLKTERLMGDWY 60 M ++ I ++L F V++A A + S+ +L+QV++A+ E+ + W Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTN----------WL 50 Query: 61 TNLTAGIRRTLAIAKSSDPSLAAYFAEEAAASTKSSSEYQKQVEGL----------LVTP 110 ++ R LA+++ L A++A + Q Q+ L + P Sbjct: 51 PSIRTLARLQLAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEP 110 Query: 111 EEKALFQKIGEQRKVYLSSRDQIVKLKAAGNVEEAMRLLETTFVPTAATYQKLMREMVDI 170 EEKA++ ++ + ++S D+I+ L G EEA L T + + ++ + Sbjct: 111 EEKAIYPEVEKLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAV 170 Query: 171 QRKDIDDTAKEIDNIAAQSRILIVVLEGLILLLGIVLARTLTLGITKPLQTAVVVSRKVA 230 K D + K+ D I AQ+R+ I+V + L ++LA ++ I +PL+ AV V+++VA Sbjct: 171 NDKGADISNKQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVA 230 Query: 231 EGDLATQVQVTSRDETGQLLQSLKDMNDSLRGIVANVRTGTDTISTASAEIAAGNLDLSG 290 GDL T+++ +DETGQLL +LK MNDSL GIV VR GT TI+TAS EIA+GNLDLS Sbjct: 231 GGDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSS 290 Query: 291 RTEQQASSLEETASAMEELISTVRQNADNARQASQLAQSASSVAEQGGGVVSQVVDTMGA 350 RTE+QASSLEETASAMEEL STV+QNADNARQA+QLA SAS VA QGG VV+QVVDTMG+ Sbjct: 291 RTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGS 350 Query: 351 INASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASA 410 INASSRKI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA A Sbjct: 351 INASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGA 410 Query: 411 AKEIKELINDSVEKVGDGSRLVEQAGVTMQEVVSSVRHVTDIVAEISAASAEQTSGIEQI 470 AKEIKELI SV +V GS+LVE+AG+TM EVV SVR VTDIV EIS+AS EQ+ GIEQ+ Sbjct: 411 AKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQV 470 Query: 471 NLAITQMDQVTQQN 484 NLAI QMD+VTQQN Sbjct: 471 NLAIAQMDEVTQQN 484 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,074,225 Number of extensions: 33172 Number of successful extensions: 484 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 323 Number of HSP's successfully gapped: 71 Length of query: 518 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 429 Effective length of database: 1,198,455 Effective search space: 514137195 Effective search space used: 514137195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)