BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0036.p (1132 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312329|ref|YP_003776421.1| transcription-repair ATP-depend... 2292 0.0 gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG ... 227 4e-60 >gi|300312329|ref|YP_003776421.1| transcription-repair ATP-dependent coupling factor [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 2292 bits (5940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1114/1132 (98%), Positives = 1124/1132 (99%) Query: 1 VRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAEIPWFQPKEGERLR 60 +RFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAEIPWFQP EGERLR Sbjct: 14 IRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAEIPWFQPSEGERLR 73 Query: 61 CHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTALLRMAPPQFLAAY 120 CHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTALLRMAPPQFLAAY Sbjct: 74 CHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTALLRMAPPQFLAAY 133 Query: 121 TFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYRLDLFG 180 TFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYRLDLFG Sbjct: 134 TFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYRLDLFG 193 Query: 181 DTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRWREVFEGDPSRSAIYK 240 DTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRWREVFEGDPSRSAIYK Sbjct: 194 DTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRWREVFEGDPSRSAIYK 253 Query: 241 DIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKRFWSDTRSRWTFLH 300 DIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKRFWSDTRSRW FLH Sbjct: 254 DIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKRFWSDTRSRWNFLH 313 Query: 301 ADRERPVLEPRVIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPNIAVNRRAEDPLVN 360 ADRERPVLEP+ IYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPNIAVNRRA+DPLVN Sbjct: 314 ADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPNIAVNRRADDPLVN 373 Query: 361 LRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPALCDDWNDFLSGNEPLMLGVAPLH 420 LRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHP LC+DWN FL+ +EPLMLGVAPLH Sbjct: 374 LRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLASDEPLMLGVAPLH 433 Query: 421 AGFVTAGGLALITETELYAGSGRRVGSRKQQAATDVEYMVRDLSELKIGDPVVHSSHGIG 480 AGFVTA GLAL+TETELYAGSGRRVGSRKQQAATDVEYMVRDLSELKIGDPVVHSSHGIG Sbjct: 434 AGFVTAAGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLSELKIGDPVVHSSHGIG 493 Query: 481 RYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPEDAPLHALGSGQWE 540 RYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPEDAPLHALGSGQWE Sbjct: 494 RYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPEDAPLHALGSGQWE 553 Query: 541 KAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFGFEETADQAAAINA 600 KAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFGFEETADQAAAINA Sbjct: 554 KAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFGFEETADQAAAINA 613 Query: 601 VIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHAATFAD 660 VIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHAATFAD Sbjct: 614 VIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHAATFAD 673 Query: 661 RFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLVIIDEE 720 RFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLVIIDEE Sbjct: 674 RFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLVIIDEE 733 Query: 721 HRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVR 780 HRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVR Sbjct: 734 HRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVR 793 Query: 781 AEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPEARIGIAHGQMHERDLE 840 AEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPEARIG+AHGQMHERDLE Sbjct: 794 AEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPEARIGVAHGQMHERDLE 853 Query: 841 KVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAY 900 KVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAY Sbjct: 854 KVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAY 913 Query: 901 AYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSGEIHEIG 960 AYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSGEIHEIG Sbjct: 914 AYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSGEIHEIG 973 Query: 961 FQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCGDVHERLSLYKRFA 1020 FQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCGDVHERLSLYKR A Sbjct: 974 FQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCGDVHERLSLYKRLA 1033 Query: 1021 NCEKADAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKIDAHSEAALLQFVP 1080 NCEK+DAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKIDAHSEAALLQFVP Sbjct: 1034 NCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKIDAHSEAALLQFVP 1093 Query: 1081 NPPIDAMRIIELVQKNRQVKLNGPDKLRITANMPDLNARVQQVKATMKALTG 1132 NPPIDAMRIIELVQKNRQVKLNGPDKLRITA+MPDLNARVQQVKATMKALTG Sbjct: 1094 NPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVKATMKALTG 1145 >gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG protein [Herbaspirillum seropedicae SmR1] Length = 722 Score = 227 bits (578), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 156/390 (40%), Positives = 211/390 (54%), Gaps = 31/390 (7%) Query: 588 FEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPT 647 F+ T Q + + D+ PM RL+ GDVG GKT VA AA A+ G Q ++APT Sbjct: 292 FQLTGAQQRVLEEIRADLRQSFPMQRLLQGDVGSGKTVVAALAAAQAIDSGCQAVLMAPT 351 Query: 648 TLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEV 707 +LAEQH A V +A LS + KE T+A+ + G +VIGTH L+ D V Sbjct: 352 EILAEQHFRKIAAWMEPLDVGVAWLSGSQKKKEKTEALAHIESGAARLVIGTHALIQDTV 411 Query: 708 KFSRLGLVIIDEEHRFGVRQKEALKSLR---AEVDV------LTLTATPIPRTLGMALEG 758 +F LGLVI+DE+HRFGV Q+ AL++ A+ D L ++ATPIPRTL M Sbjct: 412 QFENLGLVIVDEQHRFGVGQRLALRNKSFNPADHDSPAVPHQLMMSATPIPRTLAMTYYA 471 Query: 759 LRDFSVIATAPQKRLAIKTFV-----RAEQESTIREACLRELKRGGQVYFLHNEVE---- 809 + SVI P R I T V R E + A L G Q+Y++ +E Sbjct: 472 DLEVSVIDELPPGRSPIVTRVIDQNRRDEVIERVHAAAL----EGKQIYWVCPLIEESEA 527 Query: 810 ----TIANRKAALEQLLPEARIGIAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGID 865 T + AAL LP+ +IG+ HG+M + + VM F ++L+ TT+IE G+D Sbjct: 528 LQLQTATDTHAALSAALPDLQIGLVHGRMKPVEKQMVMEGFSRGAIHLLVATTVIEVGVD 587 Query: 866 VPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQM 925 VP A+ +++ A++FGL+QLHQLRGRVGR + LL Q L A++RL M Sbjct: 588 VPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASVCLLLYQG--PLGGTAKQRLAT---M 642 Query: 926 EELGSGFYLAMHDLEIRGAGEVLGDHQSGE 955 E GF +A DL+IRG GE LG QSGE Sbjct: 643 RETTDGFEIARRDLDIRGPGEFLGARQSGE 672 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,544,356 Number of extensions: 157331 Number of successful extensions: 487 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 486 Number of HSP's successfully gapped: 2 Length of query: 1132 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1036 Effective length of database: 1,165,310 Effective search space: 1207261160 Effective search space used: 1207261160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)