BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0029.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309642|ref|YP_003773734.1| aldo/keto reductase [Herbaspiri...   101   8e-23
gi|300312028|ref|YP_003776120.1| oxidoreductase protein [Herbasp...    72   4e-14

>gi|300309642|ref|YP_003773734.1| aldo/keto reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  101 bits (251), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 133/257 (51%), Gaps = 23/257 (8%)

Query: 6   LPALGLGTFRLKDQQV-----IDSIRNGLDLGYRHIDTAQIY---GNEAEVGQAIAESGV 57
           +P LG GT+ + +        + +++ GLDLG   IDTA++Y   G E  V +AIA    
Sbjct: 15  VPILGQGTWNMGESPAQANAEVRALQAGLDLGMSLIDTAEMYAEGGAERIVAKAIAGR-- 72

Query: 58  ARDDLFVTTKIWTENLSRDKLLPSLKESLHKLRLDQVDLTLIHWPSPQDELPVADYLQAL 117
            RD +++ +K+   N S+   + + + SL +L  D++DL L+HW       P+A  ++ +
Sbjct: 73  -RDQVYLVSKVLPHNASKRGTIAACEASLKRLGTDRIDLYLLHWRGAH---PLAATIEGM 128

Query: 118 AEAKAQGLTRLIGISNFTIAHMEQAIAAVGAEAIATNQVEIHPFLQNRKVIDF-----AR 172
               +QG     G+SNF    ++  +     E    NQV    +  +R+ I++     A+
Sbjct: 129 ETLVSQGKIGGWGVSNFDTDDIDDLLEEPHGEHYLCNQVL---YNLSRRGIEYDLLPQAQ 185

Query: 173 AKGIHLTAYMPLAYGKVMEDATLLEIAARHGVSAAQVALAWSLQQ-GFAVIPSSTRRENL 231
              I + AY P+  G++++   L  +A  H V+ AQ+ALAW L+Q G   IP +    ++
Sbjct: 186 QAHIAVMAYSPIEQGRILKHPALTALAQAHRVTPAQIALAWVLRQPGVVAIPKAADVAHV 245

Query: 232 AANLQAQRLTLSEAEMQ 248
            AN  +  ++LS A+++
Sbjct: 246 QANRASLDISLSAADLK 262


>gi|300312028|ref|YP_003776120.1| oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 138/323 (42%), Gaps = 90/323 (27%)

Query: 20  QVIDSIRNGLDLGYRHIDTAQIYG----------NEAEVGQAIAESGVARDDLFVTTKI- 68
           Q+  ++  G++L    ID A++Y            E  +G  + +SG  RD L + TK  
Sbjct: 35  QLDYAVERGINL----IDVAEMYPVPPKAETQGLTERYLGTWLKKSG-KRDQLLIATKCT 89

Query: 69  --------------WTENLSRDKLLPSLKESLHKLRLDQVDLTLIHWPSP---------- 104
                            NL R  L  +L  SL +L+LD VDL  +HWP            
Sbjct: 90  GPARKPHNPRHVRGGINNLDRKGLTEALHGSLERLQLDHVDLYQLHWPDRSVNSFGQLGY 149

Query: 105 ---QDE--LPVADYLQALAEAKAQGLTRLIGISNFT---IAHMEQAIAAVGAEAIATNQV 156
              +DE  +P+ + L  L+E    G  R IG+SN T   +A   +A    G E I T Q 
Sbjct: 150 QHVEDESTVPIEETLTVLSEFVKAGKIRTIGLSNETAWGVAQFLRAAEQHGLERIVTIQ- 208

Query: 157 EIHPF-LQNR----KVIDFARAKGIHLTAYMPLAY----GKVMEDA-------TLLE--- 197
             +P+ L NR     + +FA  + + L AY PLA+    GK ++ A       TL E   
Sbjct: 209 --NPYNLLNRSFEINLAEFAHREQVGLLAYSPLAFGMLSGKYLDGARPAGGRLTLFERFS 266

Query: 198 ----------------IAARHGVSAAQVALAWSLQQGF--AVIPSSTRRENLAANLQAQR 239
                           +A +HG+  AQ+ALA+   + F  + I  +T    L +N+ +  
Sbjct: 267 RYTNAQAERATAEYVALARQHGLDPAQMALAYVNSRPFLTSNIIGATTLAQLRSNIDSAE 326

Query: 240 LTLSEAEMQAIAALDRGERLANP 262
           L L E  + AI A+ R  R  NP
Sbjct: 327 LQLGEDVLAAIEAIHR--RQPNP 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 803,159
Number of extensions: 31196
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)