BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0017.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310499|ref|YP_003774591.1| exodeoxyribonuclease VII large ...   404   e-114

>gi|300310499|ref|YP_003774591.1| exodeoxyribonuclease VII large
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  404 bits (1038), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/211 (91%), Positives = 203/211 (96%)

Query: 31  ILTVSGLNQAVARMLERNFPLIWVKGEISNFTRAASGHWYFNLKDDGAQVRAVMFKGRAQ 90
           +LTVS LNQAV RMLERNFPL+WVKGE+SNFTRAASGHWYFNLKD+GAQVRAVMFKGRAQ
Sbjct: 1   MLTVSALNQAVGRMLERNFPLLWVKGEVSNFTRAASGHWYFNLKDEGAQVRAVMFKGRAQ 60

Query: 91  YAGFMPREGDKVEVRTLVTLYAPRGDYQLNVEAIRRSGVGDLYAAFVQLKERLEREGLFD 150
           YAGFMPREGDKVEVRTLVTLYAPRGDYQLNVEAIRRSGVGDLYAAF+QLKERLEREGLF 
Sbjct: 61  YAGFMPREGDKVEVRTLVTLYAPRGDYQLNVEAIRRSGVGDLYAAFLQLKERLEREGLFA 120

Query: 151 RDRKRALPGFPRRIGIVTSPQAAALRDVLTTLRRRAPHVEVILYPTPVQGEGSAQRIANA 210
           R+RKRALPGFPRRIGIVTSPQAAALRDVLTTLRRRAPHVEV+LYPTPVQGEG+ QRIA A
Sbjct: 121 RERKRALPGFPRRIGIVTSPQAAALRDVLTTLRRRAPHVEVVLYPTPVQGEGAGQRIAAA 180

Query: 211 IRTASARAECDVLLVCRGGGSIEDLWSFNED 241
           I  AS RAECDVLLVCRGGGSIEDLWSFNE+
Sbjct: 181 IGRASERAECDVLLVCRGGGSIEDLWSFNEE 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 726,206
Number of extensions: 30237
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)