BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0014.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310502|ref|YP_003774594.1| tetraacyldisaccharide 4'-kinase...   578   e-166

>gi|300310502|ref|YP_003774594.1| tetraacyldisaccharide 4'-kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  578 bits (1489), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/345 (83%), Positives = 317/345 (91%), Gaps = 3/345 (0%)

Query: 1   MAESRPTAEAILTRAWQQRGLLACLLWPLSLLFGTLAALRRALFALGIKRAERLPVPVIV 60
           MA+SRP AEAIL+RAWQ RG LACLLWPLSLLF  L+ +RR LFALG+KR+ERLPVPV+V
Sbjct: 1   MADSRPNAEAILSRAWQSRGPLACLLWPLSLLFAALSGVRRLLFALGVKRSERLPVPVVV 60

Query: 61  VGNVFVGGTGKTPFAIWLIEALRAAGLRPGVISRGYGGGAGQTLEVTADAAAAQVGDEPL 120
           VGN+FVGGTGKTPFAIWLIEALRAAG  PGVISRGYGGGA QT+EV+A +AAAQVGDEPL
Sbjct: 61  VGNIFVGGTGKTPFAIWLIEALRAAGYTPGVISRGYGGGAQQTVEVSATSAAAQVGDEPL 120

Query: 121 LIVQRTGVPLVVGRRRAEAGRALLAAHPEVDVIISDDGLQHYALARDIEIVLSDARGVGN 180
           LI QRTG PLVVGRRR +A RALLAAHP+VDV++SDDGLQHYA+ARDIEIVLSDARGVGN
Sbjct: 121 LIAQRTGAPLVVGRRRVQAARALLAAHPQVDVLVSDDGLQHYAMARDIEIVLSDARGVGN 180

Query: 181 GWLLPAGPLREPASRRRDFSVVNVGAQ---GSASGGAHAMRLQADQAVQLAPPAAHKPLE 237
           GWLLPAGPLREPASRRRDFSV+NVG+    G+A  G HAM+L A +AVQLAPPAA KPL 
Sbjct: 181 GWLLPAGPLREPASRRRDFSVLNVGSSGMAGAAPAGVHAMQLLATEAVQLAPPAARKPLA 240

Query: 238 RMGEGGVRLAAVAGIGNPGRFFATLEAAGLSFARHPLPDHFDFAIDPFAGLAADVILITE 297
           RMGEGG+RLAA+AGIG+P RFFATL+AAGLSF+RHPLPDH+DFA+DPFAGLAAD ILITE
Sbjct: 241 RMGEGGLRLAALAGIGHPERFFATLQAAGLSFSRHPLPDHYDFAVDPFAGLAADAILITE 300

Query: 298 KDAVKCRAIEAIRNDPRIWVVPVSARIDGALAEHIVEKLRERPTA 342
           KDAVKCRAIEAIRNDPRIWVVPV+ARIDGALAEHIVEKLRERPTA
Sbjct: 301 KDAVKCRAIEAIRNDPRIWVVPVTARIDGALAEHIVEKLRERPTA 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 986,635
Number of extensions: 38777
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)