BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0011.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310504|ref|YP_003774596.1| adenylate kinase [Herbaspirillu...   387   e-109

>gi|300310504|ref|YP_003774596.1| adenylate kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 218

 Score =  387 bits (993), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/203 (92%), Positives = 196/203 (96%)

Query: 27  MRLILLGAPGAGKGTQATFIKEKFNIPQISTGDMLRAAVAAGTELGIAAKKVMDAGGLVS 86
           MRLILLGAPGAGKGTQATFIKEKFNIPQISTGDMLRAAVAAGTELG+AAKKVMDAGGLVS
Sbjct: 1   MRLILLGAPGAGKGTQATFIKEKFNIPQISTGDMLRAAVAAGTELGVAAKKVMDAGGLVS 60

Query: 87  DDIIIGLVKDRLQQADCANGYLFDGFPRTTRQADAMKEAGVAIDYVLEIDVPDSAIVERM 146
           DDIIIGLVKDRL+QADCANGYLFDGFPRTTRQADAMKEAGVAIDYVLEIDVPDSAIVERM
Sbjct: 61  DDIIIGLVKDRLKQADCANGYLFDGFPRTTRQADAMKEAGVAIDYVLEIDVPDSAIVERM 120

Query: 147 SGRRVHPGSGRTYHVKFNPPKVEGKDDLTGEALIQRDDDKEETVKKRLAVYHEQTEVLVG 206
           SGRRVHPGSGR+YHVKFNPPKVEGKDD+TGE L+QRDDDKEETV KRLAVYH+QT+VL+G
Sbjct: 121 SGRRVHPGSGRSYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVLKRLAVYHDQTKVLLG 180

Query: 207 YYGDWAKSGQPGAPKYRKXGGGG 229
           YY +WA SGQPGAPKYRK  G G
Sbjct: 181 YYSNWAASGQPGAPKYRKIAGVG 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 808,418
Number of extensions: 35156
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)