BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0009.p
         (679 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310505|ref|YP_003774597.1| V-type H(+)-translocating pyrop...  1218   0.0  

>gi|300310505|ref|YP_003774597.1| V-type H(+)-translocating
           pyrophosphatase [Herbaspirillum seropedicae SmR1]
          Length = 682

 Score = 1218 bits (3152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/666 (95%), Positives = 657/666 (98%)

Query: 1   MALALWFALACGLVAVIYGLVSRSWILKQDPGNPRMQEIALAIQQGAAAYLARQYRTIAM 60
           MALALWFA+ACG+VAVIYGLVSR+WILKQDPGNPRMQ+IALAIQQGA+AYLARQYRTIAM
Sbjct: 3   MALALWFAIACGIVAVIYGLVSRNWILKQDPGNPRMQDIALAIQQGASAYLARQYRTIAM 62

Query: 61  VGVVLLILIALIPGLGWLTAIGFLLGAVLSGACGFIGMNVSVRANVRTAQAATRGMNEAL 120
           VGVVLLILIALIPGLGWLTAIGFLLGAVLSGACGFIGMNVSVRANVRTAQAAT+GMN+AL
Sbjct: 63  VGVVLLILIALIPGLGWLTAIGFLLGAVLSGACGFIGMNVSVRANVRTAQAATQGMNQAL 122

Query: 121 GVAFRGGAITGMLVVGLGLLGVSLFFWVLYVYGQGRAASLHDAIQPLIGLAFGASLISIF 180
            VAFRGGAITGMLVVGLGLLGVSLFFWVLY+YGQGRAASLHDAIQPLIGLAFGASLISIF
Sbjct: 123 AVAFRGGAITGMLVVGLGLLGVSLFFWVLYIYGQGRAASLHDAIQPLIGLAFGASLISIF 182

Query: 181 ARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYV 240
           ARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYV
Sbjct: 183 ARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYV 242

Query: 241 VTLVATMLLGSLMLKGLETLAVLYPLALGGVSILASIVGCAMVKAQPGKKIMSALYTGLW 300
           VTLVATMLLGSLML G+ETLAVLYPLALGGVSILASIVGCAMVKAQPGKKIMSALYTGLW
Sbjct: 243 VTLVATMLLGSLMLTGMETLAVLYPLALGGVSILASIVGCAMVKAQPGKKIMSALYTGLW 302

Query: 301 WSAGLSLVGFAAVTWLLLPPELRVPLMGAAVVGIVLTGLMVYITEYYTGTDFKPVRHIAE 360
           W+AGLSL+GFA VTWLLLPP LRVPLMGAAVVGI LTGLMVYITEYYTGTDFKPV+HIA+
Sbjct: 303 WAAGLSLIGFAVVTWLLLPPPLRVPLMGAAVVGIALTGLMVYITEYYTGTDFKPVQHIAQ 362

Query: 361 ASTTGHGTNIIAGLGVSMKSTAYPVLAVCAAILASYWLAGLYGIAIAATSMLSMAGIVVA 420
           ASTTGHGTNIIAGLGVSMKSTAYPVLAVCAAIL SYWLAGLYGIAIAATSMLSMAGIVVA
Sbjct: 363 ASTTGHGTNIIAGLGVSMKSTAYPVLAVCAAILLSYWLAGLYGIAIAATSMLSMAGIVVA 422

Query: 421 LDAYGPITDNAGGIAEMSGLPDSVRAITDPLDAVGNTTKAVTKGYAIGSAGLAALVLFAD 480
           LDAYGPITDNAGGIAEMSGLP+SVRAITDPLDAVGNTTKAVTKGYAIGSAGLAALVLFAD
Sbjct: 423 LDAYGPITDNAGGIAEMSGLPESVRAITDPLDAVGNTTKAVTKGYAIGSAGLAALVLFAD 482

Query: 481 YTHALESVGKTASFDLSSPAVIIGLLIGGLIPYLFGAMAMEAVGRAAGAVVVEVRRQFRD 540
           YTHALESVGK+ASFDLSSPAVIIGL IGGLIPYLFGAMAMEAVGRAAGAVVVEVRRQF +
Sbjct: 483 YTHALESVGKSASFDLSSPAVIIGLFIGGLIPYLFGAMAMEAVGRAAGAVVVEVRRQFSE 542

Query: 541 IPGIMDGSGRPEYDRAVDMLTSSAIREMILPSLLPVIVPILVGLLLGPSALGGLLMGTIV 600
           I GIMDGSGRPEYD+AVDMLTSSAIREMILPSLLPVIVPILVG+LLGPSALGGLLMGTIV
Sbjct: 543 IKGIMDGSGRPEYDKAVDMLTSSAIREMILPSLLPVIVPILVGMLLGPSALGGLLMGTIV 602

Query: 601 TGLFVAISMTTGGGAWDNAKKYIEDGHHGGKGSDAHKAAVTGDTVGDPYKDTAGPAVNPL 660
           TGLFVAISMTTGGGAWDNAKKYIEDGHHGGKGS+AHKAAVTGDTVGDPYKDTAGPAVNPL
Sbjct: 603 TGLFVAISMTTGGGAWDNAKKYIEDGHHGGKGSEAHKAAVTGDTVGDPYKDTAGPAVNPL 662

Query: 661 IKIINI 666
           IKIINI
Sbjct: 663 IKIINI 668


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,921,634
Number of extensions: 78350
Number of successful extensions: 347
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 587
Effective length of database: 1,184,250
Effective search space: 695154750
Effective search space used: 695154750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)