BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0005.p
         (164 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310509|ref|YP_003774601.1| hypothetical protein Hsero_1176...   293   4e-81

>gi|300310509|ref|YP_003774601.1| hypothetical protein Hsero_1176
           [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score =  293 bits (751), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 142/161 (88%), Positives = 149/161 (92%)

Query: 4   ATQQASHHHHDNYDNHDSHTAPPMNTEGKMSLFKTVPPNIVQSIRAFRVTELQQEAAHLQ 63
           A  Q    H  ++D+H SHTAPPM+TEGK+SLFKTVPPNIVQSIRAFRV ELQQEAAHLQ
Sbjct: 12  ARMQVRPGHQIHHDSHHSHTAPPMDTEGKISLFKTVPPNIVQSIRAFRVNELQQEAAHLQ 71

Query: 64  QHFLYAYCAEAVTKQQVLTTIATAFQFPRHFGKNFDALHDCLTDLTHKAGKQIGFVVVLE 123
           QHFLYAYCA+AVTKQQVLT+IATAF FPRHFGKNFDALHDCLTDLTHKAGKQ GFVVVLE
Sbjct: 72  QHFLYAYCAQAVTKQQVLTSIATAFHFPRHFGKNFDALHDCLTDLTHKAGKQPGFVVVLE 131

Query: 124 QLPNTQKFDKEARETLLDVFRDAADYWAEKKVPFRVFYSFQ 164
           QLPNTQKFDKEARETLLDVFRDAADYWAEKKVPFRVFYSFQ
Sbjct: 132 QLPNTQKFDKEARETLLDVFRDAADYWAEKKVPFRVFYSFQ 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 391,222
Number of extensions: 13107
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 86
Effective length of database: 1,250,540
Effective search space: 107546440
Effective search space used: 107546440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)