BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0004.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide formy...   332   2e-92
gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformyl...   100   9e-23

>gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide
           formyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  332 bits (850), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 163/186 (87%), Positives = 174/186 (93%)

Query: 1   MEAIVRAAQAERWPARIAAVISNRADASGLEFAASQGIATAVVANRDYPTRDQFDAALRE 60
           MEAIVRAAQAE+WPA+IAAVISNRADASGL FAA +GI TAV+ +RDY TR+QFD+ALR+
Sbjct: 15  MEAIVRAAQAEQWPAKIAAVISNRADASGLAFAAQRGIPTAVIPSRDYSTREQFDSALRD 74

Query: 61  QIDVFAPDLVVLAGFMRILTAPFVNHYRGRMLNIHPSLLPSFPGLATHRQALAAGVKLHG 120
           +ID FAPDLVVLAGFMRILTAPFV HY+GRMLNIHPSLLPSFPGLATHRQALAAGVKLHG
Sbjct: 75  KIDTFAPDLVVLAGFMRILTAPFVEHYQGRMLNIHPSLLPSFPGLATHRQALAAGVKLHG 134

Query: 121 ATVHFVTPDLDHGPIVAQAAVPVLEEDSEETLAERVLEQEHVIYPRAVRWFVQGRLALDG 180
           ATVHFVTPDLDHGPIVAQAAVPV EEDSEE LAERVLEQEHVIYPRAVRWF+ GRL LDG
Sbjct: 135 ATVHFVTPDLDHGPIVAQAAVPVQEEDSEEALAERVLEQEHVIYPRAVRWFIDGRLRLDG 194

Query: 181 ARVRLA 186
            RVRLA
Sbjct: 195 HRVRLA 200


>gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformylase
           [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  100 bits (248), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 88/173 (50%), Gaps = 5/173 (2%)

Query: 14  PARIAAVISNRADASGLEFAASQGIA---TAVVANRDYPTRDQFDAALREQIDVFAPDLV 70
           P  I A++SN  D    + AAS  I      +        +   +  + E ++    DLV
Sbjct: 115 PVEIPAIVSNHTDF--YQLAASYNIPFHHLPLATGAPMEVKRAQEQRIMEIVEANQIDLV 172

Query: 71  VLAGFMRILTAPFVNHYRGRMLNIHPSLLPSFPGLATHRQALAAGVKLHGATVHFVTPDL 130
           VLA +M+IL+       RGR +NIH S LPSF G   + QA   GVKL GAT HFVT DL
Sbjct: 173 VLARYMQILSPEMCEALRGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHFVTGDL 232

Query: 131 DHGPIVAQAAVPVLEEDSEETLAERVLEQEHVIYPRAVRWFVQGRLALDGARV 183
           D GPI+ Q    V      +TL     + E V+  RAV+WF + R+ L+G + 
Sbjct: 233 DEGPIIEQGVERVDHSMGPDTLTAIGRDIECVVLARAVKWFTEHRILLNGHKT 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 618,898
Number of extensions: 26372
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)