BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0185.p
         (86 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309370|ref|YP_003773462.1| hypothetical protein Hsero_0024...   157   1e-40
gi|300309367|ref|YP_003773459.1| hypothetical protein Hsero_0021...   150   2e-38

>gi|300309370|ref|YP_003773462.1| hypothetical protein Hsero_0024
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  157 bits (398), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 80/85 (94%)

Query: 1   MANAPGPLELLPTAQYKTWSNRGERHWLRVSYVGIGQRGMAEEMESFLGEGDPYRNIYLN 60
           MANAPGPLELLPTAQYKTW+N+GERHWLRVSY+GIGQRG+ EEMESFLGEGDPY  IYLN
Sbjct: 321 MANAPGPLELLPTAQYKTWTNQGERHWLRVSYLGIGQRGLPEEMESFLGEGDPYAKIYLN 380

Query: 61  NSSDWWKLIREDLIDPAGREDSKHD 85
           N++DWWKLIREDL++PAGRED + +
Sbjct: 381 NTADWWKLIREDLVNPAGREDRERN 405


>gi|300309367|ref|YP_003773459.1| hypothetical protein Hsero_0021
           [Herbaspirillum seropedicae SmR1]
          Length = 576

 Score =  150 bits (379), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 75/83 (90%)

Query: 1   MANAPGPLELLPTAQYKTWSNRGERHWLRVSYVGIGQRGMAEEMESFLGEGDPYRNIYLN 60
           MANAPGPLELLPTAQYKTW+N+GERHWLR SY  IGQRGM EEM+SFLGEGDPY  IYLN
Sbjct: 317 MANAPGPLELLPTAQYKTWTNQGERHWLRTSYRAIGQRGMPEEMDSFLGEGDPYAEIYLN 376

Query: 61  NSSDWWKLIREDLIDPAGREDSK 83
           N+ DWWKL+RE+LIDPAG+ED +
Sbjct: 377 NTLDWWKLVREELIDPAGKEDKE 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 334,077
Number of extensions: 12906
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 2
Length of query: 86
Length of database: 1,619,870
Length adjustment: 56
Effective length of query: 30
Effective length of database: 1,354,710
Effective search space: 40641300
Effective search space used: 40641300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)