BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0183.p (169 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309372|ref|YP_003773464.1| hypothetical protein Hsero_0026... 254 3e-69 gi|300309367|ref|YP_003773459.1| hypothetical protein Hsero_0021... 252 9e-69 gi|300309370|ref|YP_003773462.1| hypothetical protein Hsero_0024... 243 6e-66 gi|300313607|ref|YP_003777699.1| hypothetical protein Hsero_4322... 60 8e-11 >gi|300309372|ref|YP_003773464.1| hypothetical protein Hsero_0026 [Herbaspirillum seropedicae SmR1] Length = 161 Score = 254 bits (648), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/153 (81%), Positives = 132/153 (86%) Query: 1 MIAPVKGPAPTRLVPTAWDEQGNEIAQSVLTGQRMKVRALCLTSPDFVMPIVFVPGIMGT 60 MI KGP PTRLVPTAWDEQGN++AQSVLTGQRMKVRALCLTSPD V+P+VFVP IMGT Sbjct: 1 MIMQSKGPGPTRLVPTAWDEQGNDVAQSVLTGQRMKVRALCLTSPDIVIPVVFVPSIMGT 60 Query: 61 RLKLKGRDKGPAWFPPEGGWETLALALKHVVRTAADRQRLLNPDSTEVDEDGPAFPDDIS 120 RLKLKGR KGPAWFPPEG WETLALALKHV RTAADRQRLLNPD+TE DEDG A+PDDIS Sbjct: 61 RLKLKGRGKGPAWFPPEGKWETLALALKHVGRTAADRQRLLNPDNTEADEDGSAYPDDIS 120 Query: 121 KTLLAFAPGKSDAERIKWRGWGQLHADSYLPIL 153 KTLLAFAPGK+DAERIKW GWG + P Sbjct: 121 KTLLAFAPGKTDAERIKWWGWGNSTRTAICPFF 153 >gi|300309367|ref|YP_003773459.1| hypothetical protein Hsero_0021 [Herbaspirillum seropedicae SmR1] Length = 576 Score = 252 bits (644), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 118/151 (78%), Positives = 132/151 (87%) Query: 5 VKGPAPTRLVPTAWDEQGNEIAQSVLTGQRMKVRALCLTSPDFVMPIVFVPGIMGTRLKL 64 + G PTRLV T WD+ GN++AQSVLTGQ MKVRALCLT+PD V+PI+FVPGIMGTRLK+ Sbjct: 1 MSGFEPTRLVGTTWDDDGNDVAQSVLTGQNMKVRALCLTTPDVVVPILFVPGIMGTRLKV 60 Query: 65 KGRDKGPAWFPPEGGWETLALALKHVVRTAADRQRLLNPDSTEVDEDGPAFPDDISKTLL 124 GRDKGPAWFPPE WE+L LA KH+VRT ADRQRLLNPD+TEVDEDGPA PDD SKTLL Sbjct: 61 TGRDKGPAWFPPESTWESLVLAFKHLVRTPADRQRLLNPDTTEVDEDGPASPDDTSKTLL 120 Query: 125 AFAPGKSDAERIKWRGWGQLHADSYLPILSL 155 + APG +DAERIKWRGWGQLHADSYL ILS+ Sbjct: 121 SLAPGNTDAERIKWRGWGQLHADSYLGILSM 151 >gi|300309370|ref|YP_003773462.1| hypothetical protein Hsero_0024 [Herbaspirillum seropedicae SmR1] Length = 534 Score = 243 bits (620), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 114/146 (78%), Positives = 127/146 (86%) Query: 1 MIAPVKGPAPTRLVPTAWDEQGNEIAQSVLTGQRMKVRALCLTSPDFVMPIVFVPGIMGT 60 M P P RLVPTAWDE GN++ QSVLTG+ MKVRALCLT+PD V+PIVFVPGIMGT Sbjct: 1 MTRPAAAAGPMRLVPTAWDEVGNDVMQSVLTGKSMKVRALCLTTPDVVIPIVFVPGIMGT 60 Query: 61 RLKLKGRDKGPAWFPPEGGWETLALALKHVVRTAADRQRLLNPDSTEVDEDGPAFPDDIS 120 RLK+KGR K AWFPP+GGWE+L LAL+H+ RTAADRQRLLNP +TEVD+DGPAFPDDIS Sbjct: 61 RLKVKGRIKDAAWFPPDGGWESLVLALRHIGRTAADRQRLLNPATTEVDDDGPAFPDDIS 120 Query: 121 KTLLAFAPGKSDAERIKWRGWGQLHA 146 KTLL FAPGK+DAERIKWRGWGQLHA Sbjct: 121 KTLLGFAPGKTDAERIKWRGWGQLHA 146 >gi|300313607|ref|YP_003777699.1| hypothetical protein Hsero_4322 [Herbaspirillum seropedicae SmR1] Length = 534 Score = 60.5 bits (145), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 17/142 (11%) Query: 12 RLVPTAWDEQGNEIAQSVLTGQRMKVRALCLTSPDFVMPIVFVPGIMGTRLKLKGRDKGP 71 RL+ +D++GN +S L+ A+C PD V+P++FVPG+MG+ LK G G Sbjct: 8 RLLTATFDKKGNPEWKSTLSSPD-DSYAVCHMIPDRVIPVIFVPGVMGSNLKGIGDADGV 66 Query: 72 AWFPPEGGWETLALALKHVVRTAADRQRLLNPDSTEVDEDGPAFPDDISKTLLAFAPGKS 131 W ++ L + R A R+R L P VD+DG P ++ Sbjct: 67 RW-----RLDSEFSMLMWLTRGPAKRKRYLTPKKMVVDDDGTR-PSGTAQ---------- 110 Query: 132 DAERIKWRGWGQLHADSYLPIL 153 E +K RGWG++ A SY L Sbjct: 111 HGEELKRRGWGEVGAMSYGDFL 132 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 606,947 Number of extensions: 25342 Number of successful extensions: 75 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 74 Number of HSP's successfully gapped: 4 Length of query: 169 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 90 Effective length of database: 1,245,805 Effective search space: 112122450 Effective search space used: 112122450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)