BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0182.p (187 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309368|ref|YP_003773460.1| hypothetical protein Hsero_0022... 318 2e-88 gi|300309369|ref|YP_003773461.1| hypothetical protein Hsero_0023... 316 7e-88 gi|300309374|ref|YP_003773466.1| hypothetical protein Hsero_0028... 298 2e-82 gi|300309371|ref|YP_003773463.1| signal peptide protein [Herbasp... 296 9e-82 >gi|300309368|ref|YP_003773460.1| hypothetical protein Hsero_0022 [Herbaspirillum seropedicae SmR1] Length = 357 Score = 318 bits (815), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 144/187 (77%), Positives = 170/187 (90%) Query: 1 VERMRLTLAGLRKRATHDIPTAPGYCFEGGFIANPEWEMEEAGIDITIAGHPDAFVSVWF 60 +E MR L+ L+KR+TH+IP+ PGYCFEGGFIANPEWEMEEA IDI IAGHPDAFVS+WF Sbjct: 171 IEGMRKMLSSLKKRSTHEIPSEPGYCFEGGFIANPEWEMEEAAIDIDIAGHPDAFVSIWF 230 Query: 61 YPLARSAHSKPLLDRMGGVLQTLGQMATSVHVLRKGERQVGPYRGQEFLASAPSSRGMRG 120 YPL+R AHS PLLDR+GGVLQ LG+MATSVHVLR+G+RQVGPY+GQEFL +AP+S G+RG Sbjct: 231 YPLSRRAHSAPLLDRVGGVLQALGRMATSVHVLRRGDRQVGPYKGQEFLVTAPNSGGLRG 290 Query: 121 HKFIWETEGDGTLDTPALKIELTTGYRDKKGNPQQTRLTDEQAIKLWDDVLNSFRLRPVL 180 H FIWETEG+GTLD PALKIELTTG+RDK GNPQQTRLT+E+A+KLWD+VL+SFRLRPV+ Sbjct: 291 HSFIWETEGEGTLDAPALKIELTTGHRDKNGNPQQTRLTNEEAMKLWDEVLDSFRLRPVV 350 Query: 181 DPQGSRP 187 PQ ++P Sbjct: 351 APQENQP 357 >gi|300309369|ref|YP_003773461.1| hypothetical protein Hsero_0023 [Herbaspirillum seropedicae SmR1] Length = 353 Score = 316 bits (810), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 147/187 (78%), Positives = 170/187 (90%), Gaps = 2/187 (1%) Query: 1 VERMRLTLAGLRKRATHDIPTAPGYCFEGGFIANPEWEMEEAGIDITIAGHPDAFVSVWF 60 ++RM+ LAGLRKR+TH+IPT PGYCFEGGFIANPEWEMEEAGIDI AGHPDA+VSVWF Sbjct: 169 IDRMQTILAGLRKRSTHEIPTEPGYCFEGGFIANPEWEMEEAGIDI--AGHPDAYVSVWF 226 Query: 61 YPLARSAHSKPLLDRMGGVLQTLGQMATSVHVLRKGERQVGPYRGQEFLASAPSSRGMRG 120 YPL+ AHS+PLLDR+GGVLQ LG+MATSVH LR+G+RQVGPY+GQEFL +AP+S G+RG Sbjct: 227 YPLSLRAHSQPLLDRVGGVLQMLGRMATSVHALRRGDRQVGPYKGQEFLVTAPNSGGLRG 286 Query: 121 HKFIWETEGDGTLDTPALKIELTTGYRDKKGNPQQTRLTDEQAIKLWDDVLNSFRLRPVL 180 H FIWETEG+GTLD PALKIELTTG+RDK GNPQQTRLT+EQA+KLWD+VL+SFRLRPV Sbjct: 287 HSFIWETEGEGTLDAPALKIELTTGHRDKNGNPQQTRLTNEQAMKLWDEVLDSFRLRPVA 346 Query: 181 DPQGSRP 187 PQ +RP Sbjct: 347 HPQETRP 353 >gi|300309374|ref|YP_003773466.1| hypothetical protein Hsero_0028 [Herbaspirillum seropedicae SmR1] Length = 326 Score = 298 bits (763), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 138/187 (73%), Positives = 156/187 (83%) Query: 1 VERMRLTLAGLRKRATHDIPTAPGYCFEGGFIANPEWEMEEAGIDITIAGHPDAFVSVWF 60 +ERMRLTLA LRKRATHDIP PGYCFEGGFIANP+WE EEAGIDI IAGHPDAFVS+WF Sbjct: 138 IERMRLTLAALRKRATHDIPQDPGYCFEGGFIANPDWENEEAGIDIDIAGHPDAFVSLWF 197 Query: 61 YPLARSAHSKPLLDRMGGVLQTLGQMATSVHVLRKGERQVGPYRGQEFLASAPSSRGMRG 120 YPLA S H +PLLDRM LQTLG +AT+V LRKG+RQVGPY+GQEFLA+ P+ G R Sbjct: 198 YPLAMSKHDRPLLDRMSSGLQTLGHLATAVRTLRKGDRQVGPYQGQEFLATTPNRGGGRS 257 Query: 121 HKFIWETEGDGTLDTPALKIELTTGYRDKKGNPQQTRLTDEQAIKLWDDVLNSFRLRPVL 180 H FIWETEG GTLDTPA+KIELTTG+ DK N Q TR++D QA++LWD+VLNSFRLRP + Sbjct: 258 HSFIWETEGQGTLDTPAIKIELTTGHHDKNSNAQATRMSDAQALQLWDEVLNSFRLRPAI 317 Query: 181 DPQGSRP 187 PQ S P Sbjct: 318 PPQASSP 324 >gi|300309371|ref|YP_003773463.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 296 bits (757), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 140/187 (74%), Positives = 155/187 (82%) Query: 1 VERMRLTLAGLRKRATHDIPTAPGYCFEGGFIANPEWEMEEAGIDITIAGHPDAFVSVWF 60 V RMR TLA LR R DIPT PGYCFEGGFIANPEWE EEAGIDI IAGHPDAFVSVWF Sbjct: 166 VARMRETLANLRTRQDDDIPTEPGYCFEGGFIANPEWENEEAGIDIDIAGHPDAFVSVWF 225 Query: 61 YPLARSAHSKPLLDRMGGVLQTLGQMATSVHVLRKGERQVGPYRGQEFLASAPSSRGMRG 120 YPL S H KPLL RM +Q+LG++A +V VLRKGERQVGPY GQEFL SAP+S GMRG Sbjct: 226 YPLLMSKHDKPLLTRMSSAIQSLGRLAAAVRVLRKGERQVGPYTGQEFLVSAPNSGGMRG 285 Query: 121 HKFIWETEGDGTLDTPALKIELTTGYRDKKGNPQQTRLTDEQAIKLWDDVLNSFRLRPVL 180 H FIWETEG+GTLDTPALKIEL TG+ DK NPQ+T+L+D QAI+LWD+VLNSFRLRPV Sbjct: 286 HSFIWETEGEGTLDTPALKIELITGHHDKDSNPQKTKLSDAQAIQLWDEVLNSFRLRPVA 345 Query: 181 DPQGSRP 187 D + S+P Sbjct: 346 DTEESQP 352 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 679,722 Number of extensions: 29376 Number of successful extensions: 74 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 73 Number of HSP's successfully gapped: 4 Length of query: 187 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 107 Effective length of database: 1,241,070 Effective search space: 132794490 Effective search space used: 132794490 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)