BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0181.p
         (61 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309368|ref|YP_003773460.1| hypothetical protein Hsero_0022...    85   1e-18
gi|300309369|ref|YP_003773461.1| hypothetical protein Hsero_0023...    78   1e-16
gi|300309371|ref|YP_003773463.1| signal peptide protein [Herbasp...    76   6e-16
gi|300309374|ref|YP_003773466.1| hypothetical protein Hsero_0028...    68   2e-13

>gi|300309368|ref|YP_003773460.1| hypothetical protein Hsero_0022
           [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score = 85.1 bits (209), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 42/46 (91%)

Query: 1   MSRQDYTIDRMRKILANLQKRSTHNIPTEPGYCFEDGFIANPEWEL 46
           MSRQDY I+ MRK+L++L+KRSTH IP+EPGYCFE GFIANPEWE+
Sbjct: 164 MSRQDYAIEGMRKMLSSLKKRSTHEIPSEPGYCFEGGFIANPEWEM 209


>gi|300309369|ref|YP_003773461.1| hypothetical protein Hsero_0023
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score = 78.2 bits (191), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 38/45 (84%)

Query: 2   SRQDYTIDRMRKILANLQKRSTHNIPTEPGYCFEDGFIANPEWEL 46
           S Q+  IDRM+ ILA L+KRSTH IPTEPGYCFE GFIANPEWE+
Sbjct: 163 SYQEDAIDRMQTILAGLRKRSTHEIPTEPGYCFEGGFIANPEWEM 207


>gi|300309371|ref|YP_003773463.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 352

 Score = 75.9 bits (185), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 36/44 (81%)

Query: 2   SRQDYTIDRMRKILANLQKRSTHNIPTEPGYCFEDGFIANPEWE 45
           SRQDY + RMR+ LANL+ R   +IPTEPGYCFE GFIANPEWE
Sbjct: 160 SRQDYAVARMRETLANLRTRQDDDIPTEPGYCFEGGFIANPEWE 203


>gi|300309374|ref|YP_003773466.1| hypothetical protein Hsero_0028
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score = 67.8 bits (164), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 2   SRQDYTIDRMRKILANLQKRSTHNIPTEPGYCFEDGFIANPEWE 45
           S Q   I+RMR  LA L+KR+TH+IP +PGYCFE GFIANP+WE
Sbjct: 132 SYQADAIERMRLTLAALRKRATHDIPQDPGYCFEGGFIANPDWE 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 185,279
Number of extensions: 5067
Number of successful extensions: 15
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 4
Length of query: 61
Length of database: 1,619,870
Length adjustment: 33
Effective length of query: 28
Effective length of database: 1,463,615
Effective search space: 40981220
Effective search space used: 40981220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)