BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0179.p (888 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspiri... 1444 0.0 gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspiri... 625 e-180 gi|300309621|ref|YP_003773713.1| VGR-related protein [Herbaspiri... 445 e-126 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 304 2e-83 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 300 4e-82 >gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 913 Score = 1444 bits (3739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 715/890 (80%), Positives = 778/890 (87%), Gaps = 2/890 (0%) Query: 1 LPQSHVALQDALLIQQVTGRETLCGATEVEVLCLSPREDLPLKEFMAVPAEIQLVTDQGL 60 LP SH ALQDALL+ VTGRE+LCGA E E+LCL+ REDL L++F+A+P EIQLVTD GL Sbjct: 24 LPPSHQALQDALLVMHVTGRESLCGAMEYELLCLTSREDLALEDFVALPVEIQLVTDLGL 83 Query: 61 LRTICGFIAEAHAGQIDGELSSYRLLLRDALSLMGQRINTRVFLHASEADVTQILISEWR 120 LRT+CGFIAEAHAGQ+D EL SYRL+LRDALSLMG RINTRVFL ASEADVTQ L+SEWR Sbjct: 84 LRTVCGFIAEAHAGQLDDELVSYRLVLRDALSLMGHRINTRVFLRASEADVTQALVSEWR 143 Query: 121 QRSPLLASSMEVDWSLLGERYPAREFIMQHNESDADFLRRLWKRRGIGWCIRPGEPPLPG 180 QRSPL+ASS EVDWSLL ER+PAREFIMQHNESDADFLRRLWKRRGI W IRPGEPPLP Sbjct: 144 QRSPLMASSFEVDWSLLAERFPAREFIMQHNESDADFLRRLWKRRGISWFIRPGEPPLPH 203 Query: 181 QAACPRHLLVLFDDPMQLPRNAAGSVPWRRDHAPGTQDGLLRWQATRRLRAGSVSRHTWD 240 QA PRH LVLFDD +QLPRNAAG+V +R+DHAP +DG++RW TRRLRAGSVSRH WD Sbjct: 204 QAGSPRHTLVLFDDAVQLPRNAAGAVSYRQDHAPAEEDGIVRWLGTRRLRAGSVSRHAWD 263 Query: 241 HAQDGPLQRHMNNPAAQGALGDRFAQLLDDYLVEAPHIADDGEDLDQIARARMQRLALES 300 HAQDGP++ +N A QG LGD FA+LLDDY +EAPHIADD ED QIA ARMQRLA E+ Sbjct: 264 HAQDGPMRSQVNTVAEQGELGDHFARLLDDYFIEAPHIADDREDFHQIATARMQRLAQET 323 Query: 301 KEFGADSTVRALRVGEWIDITGHPELERHPPHEREFIVTRLEFHAENNLPASLDERLRRA 360 EF ADST+RALRVGEWI + HPEL+R HEREF++TRLE +AENN PASLDE +R Sbjct: 324 AEFQADSTIRALRVGEWIGVKDHPELDRRAAHEREFVITRLEVYAENNFPASLDEHVRLV 383 Query: 361 TPHRESELGGLADLQRRCREQGLRYLNHFACVRRGIPLVPAFDPRVDLPRPRLQNAHVVG 420 H +S L LA L+RRC QG RYLN F CVRRG PLV AFDPRVDLP R+QNAHVVG Sbjct: 384 ARHHDSSLEDLAPLRRRCLAQGRRYLNRFTCVRRGTPLVAAFDPRVDLPAVRVQNAHVVG 443 Query: 421 PAGEELYCDALGRIKLRFHGTRMQDHQLAGGA--SDSERDSAWVRVASHWAGRQWGAINL 478 PAGEELYCDALGRIKLRFHGTRMQDHQ AGGA S SERDSAWVRVASHWAGRQWGAI+L Sbjct: 444 PAGEELYCDALGRIKLRFHGTRMQDHQHAGGAGASGSERDSAWVRVASHWAGRQWGAISL 503 Query: 479 PRVGDEVLVDFLGGDPDKPIVIGRLYNGLSLPPAFSGVGSLPGNRFLAGVRSKEIQGQRY 538 PRVGDEVLVDFLGGDPDKPIV+GR+YNG SLPPAFS VGSLPGNRFLAG++SKEIQGQRY Sbjct: 504 PRVGDEVLVDFLGGDPDKPIVVGRVYNGQSLPPAFSRVGSLPGNRFLAGIKSKEIQGQRY 563 Query: 539 NQLRLDDTPRQISAQLASQHGQSELNLGWLTHPRTEGRSDARGEGAELRTDQALALRGGQ 598 NQLRLDDTP+QISAQLASQHGQSELNLGWLTHPR GRSDARGEGAELRTDQALALRGGQ Sbjct: 564 NQLRLDDTPQQISAQLASQHGQSELNLGWLTHPRAGGRSDARGEGAELRTDQALALRGGQ 623 Query: 599 GVLISASRRSQASGAQLDRTEMLGLLRVLQNVQQELAELAETHHAGPTAVQSLSELRTRL 658 GVLISA R +ASG QLDR EMLGLL VLQ+VQQ+LA LA+THHA T +Q+ S LR +L Sbjct: 624 GVLISAVMRQEASGTQLDRAEMLGLLHVLQDVQQQLATLAQTHHADDTQLQTFSRLRDQL 683 Query: 659 DAWETGSNTQAEGSGGGEPVVAVTAPAGVAITSDEGVVLGAQKEIDLVSVGNTQLSAGKK 718 DAWE GSNTQA+ GGG+P+VAVTAPAGVAITSDEGV LGAQKEIDL+SVGNTQ SAGKK Sbjct: 684 DAWEAGSNTQAKSDGGGKPMVAVTAPAGVAITSDEGVALGAQKEIDLISVGNTQFSAGKK 743 Query: 719 LLVRVAESISVFAQRLGMRLVAASGKLQLQTHGDDIEATSARRIILTAVDEIVLQAPRLK 778 LL RVAESI +FAQRLG++LVAA+GKLQLQTHG D+E TSARRI+LTA DEIVLQAPRL+ Sbjct: 744 LLARVAESICLFAQRLGIQLVAANGKLQLQTHGGDVEVTSARRIVLTAADEIVLQAPRLR 803 Query: 779 LLAQGAQIDLGGGAITQQSSADHIIRSANFHHVRGADSAPPGVELLASAMRTDERFILAR 838 L AQGAQIDLGGG ITQQSS DH+IRS NFHHV GADS PPGVEL AS MRTDERFILAR Sbjct: 804 LQAQGAQIDLGGGVITQQSSGDHVIRSGNFHHVSGADSQPPGVELPASTMRTDERFILAR 863 Query: 839 RGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTALSQDQALRIARLRIVKE 888 RGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTALSQD A+RIARLRIVKE Sbjct: 864 RGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTALSQDMAMRIARLRIVKE 913 >gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 966 Score = 625 bits (1612), Expect = e-180, Method: Compositional matrix adjust. Identities = 370/821 (45%), Positives = 497/821 (60%), Gaps = 25/821 (3%) Query: 8 LQDALLIQQVTGRETLCGATEVEVLCLSPREDLPLKEFMAVPAEIQLVTDQGLLRTICGF 67 + +LL+Q+V +ETL +V++ C+S DLPL + P +++VTD+G L G Sbjct: 35 FEQSLLLQRVDIQETLLEGMQVQLTCVSTDPDLPLHTLLGQPLGVEMVTDRGRLHHTNGL 94 Query: 68 IAEAHAGQIDGELSSYRLLLRDALSLMGQRINTRVFLHASEADVTQILISEWRQRSPLLA 127 I +A AG DG L Y+L +RDALS+M R+NTR+F S + +IL+SEWRQRS LA Sbjct: 95 ITDACAGHADGALRVYQLTMRDALSIMEGRVNTRIFRRLSVPSILEILLSEWRQRSSTLA 154 Query: 128 SSMEVDWSLLGE-RYPAREFIMQHNESDADFLRRLWKRRGIGWCIRPG----EPPLPGQA 182 ++ + D L + RYPARE Q NESDA F+RRL +R GI W + G E + A Sbjct: 155 AAFKFDLDGLDDTRYPAREISHQFNESDAHFIRRLCRREGIAWYVASGQQADETAIATHA 214 Query: 183 ACPRHLLVLFDDPMQLPRNAAGSVPWRRDHAPGTQDGLLRWQATRRLRAGSVSRHTWDHA 242 P H LV D P LPR AAG+V + RD A +D + W R L GSV R +WD+ Sbjct: 215 DIPIHTLVFCDQPALLPRAAAGTVRYHRDGATEERDAISAWSRQRSLVPGSVWRRSWDYK 274 Query: 243 QDGPLQRHMNNPAAQGALGDRFAQLLDDYLVEAPHIADDGEDLDQIARARMQRLALESKE 302 + ++ QG G + A +L D L+EAPH AD D ++A RM S+ Sbjct: 275 AVRAEEASSHSIVDQGDAGYKLANILRDGLIEAPHAADSQNDHLRLADTRMLAHEARSES 334 Query: 303 FGADSTVRALRVGEWIDITGHPELERHPPHEREFIVTRLEFHAENNLPASLDERLRRATP 362 F A TVR L VG W + GHP++ P +REF+VT L+ AENN P L + +RR P Sbjct: 335 FDASGTVRDLAVGHWFLLDGHPDMRGQKPAQREFLVTSLQQQAENNFPTVLQDAIRRLAP 394 Query: 363 HRESELGGLADLQRRCREQGLRYLNHFACVRRGIPLVPAFDPRVDLPRPRLQNAHVVGPA 422 S LA LRY N C RR PL P +DPR+ LP A VVGP+ Sbjct: 395 --ASPWKNLAH-----SAADLRYRNQLTCRRRTAPLAPHYDPRLHLPPVHPITALVVGPS 447 Query: 423 GEELYCDALGRIKLRFHGTRMQDHQLA--GGASDSERDSAWVRVASHWAGRQWGAINLPR 480 EE+YCD LGRIK++ G +DH A GAS E+DSA+VRV+S WAG +G +PR Sbjct: 448 KEEVYCDELGRIKVQLQGLHPEDHAHAQGAGASGHEQDSAFVRVSSAWAGAGYGHDAVPR 507 Query: 481 VGDEVLVDFLGGDPDKPIVIGRLYNGLSLPPAFSGVGSLPGNRFLAGVRSKEIQGQRYNQ 540 VG EVL+DFLGGDPDK V G L+NG++LP FS GSLPGNRFL+G+++KEI G RYNQ Sbjct: 508 VGMEVLIDFLGGDPDKMFVAGVLHNGINLPARFSHSGSLPGNRFLSGIKTKEIGGARYNQ 567 Query: 541 LRLDDTPRQISAQLASQHGQSELNLGWLTHPRTEGRSDARGEGAELRTDQALALRGGQGV 600 LRLDD+P QIS QLAS+H S+LNLG+LT PR GR + RGEG E RTD +R +GV Sbjct: 568 LRLDDSPGQISTQLASEHQHSQLNLGYLTEPRHGGRGEDRGEGLEARTDGHGVMRAAKGV 627 Query: 601 LISASRRSQASGAQLDRTEMLGLLRVLQNVQQELAELAETHHAGPTAVQSLSELRTRLDA 660 +I+A + + G L+R +L L LQ + Q L+ A HHA T V L +R +L A Sbjct: 628 MITAQSQDRGRGRMLERAALLETLDNLQELAQRLSHDAARHHAEATDVAQLERIRAQLRA 687 Query: 661 WETGSNTQAEGSGGGE-PVVAVTAPAGVAITSDEGVVLGAQKEIDLVSVGNTQLSAGKKL 719 W+ G A G+ E P+VAV APAGV+ITS + +VLGA + IDLVS NTQLSAG++L Sbjct: 688 WDAGD--VANGAVRAETPMVAVDAPAGVSITSQDTMVLGAAQHIDLVSRANTQLSAGRRL 745 Query: 720 LVRVAESISVFAQRLGMRLVAASGKLQLQTHGDDIEATSARRIILTAVDEIVLQAPRLKL 779 L+R E +S FA + M+L++ G +++Q H + I+ ++ARRI+L A +EI+LQAP++ + Sbjct: 746 LMRAGEMLSAFAAK-HMKLISGKGSIKIQAHEEHIDLSAARRILLEASEEIILQAPKISI 804 Query: 780 LAQGAQIDLGGGAITQ--QSSADHII-----RSANFHHVRG 813 ++ GGG+ ++ S+ +H + A HHV G Sbjct: 805 RSRETTEVAGGGSFSRWNASAIEHGTSGEWRQQAAMHHVLG 845 >gi|300309621|ref|YP_003773713.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 912 Score = 445 bits (1144), Expect = e-126, Method: Compositional matrix adjust. Identities = 315/897 (35%), Positives = 444/897 (49%), Gaps = 31/897 (3%) Query: 1 LPQSHVALQDALLIQQVTGRETLCGATEVEVLCLSPREDLPLKEFMAVPAEIQLVTDQGL 60 LP S + L+ QVTG E +CG V C S DL + VP + G Sbjct: 32 LPSSAPSAVQRLVALQVTGTEAVCGNVIYRVQCASSAADLDIHALQGVPIGFSVKEGDGG 91 Query: 61 LRTICGFIAEAHAGQIDGELSSYRLL--LRDALSLMGQRINTRVFLHASEADVTQILISE 118 +CG QI E + L L DAL L+ QR RVF S ++++ +++E Sbjct: 92 AALVCGLATSVR--QIHSEAGAVLLEIELCDALRLLEQRKTWRVFCDLSVLEISEQILTE 149 Query: 119 WRQRSPLLASSMEVDWSLLGERYPAREFIMQHNESDADFLRRLWKRRGIGWCIRPGEPPL 178 R + +LA+++ S L + YP R F+MQ ESDADFL+RLW++ GI W R L Sbjct: 150 HRHDNSVLAAALRWHVSGLHKAYPKRAFVMQAGESDADFLQRLWRQEGIAWHFRFA---L 206 Query: 179 PGQAACPRHLLVLFDDPMQLPRNAAGSVPWRRDHAPGTQDGLLRWQATRRLRAGSVSRHT 238 G P H L L D P P ++A ++ + + D + W+A V+ Sbjct: 207 EGNE--PVHHLHLADHPSAYPDHSAVALRFHQAGVMEQTDTVTHWEAWCEQSIDEVTLTA 264 Query: 239 WDHAQDGPLQRHMNNPAAQGALGDRFAQLLDDYLVEAPHIADDGEDLDQIARARMQRLAL 298 +D+ + Q + G A+ L+DY P +A Q+AR R++ L Sbjct: 265 FDYKANRCTQAQEKALRGKDGAGLALARTLEDYEYAPPVLAAGLAHQQQMARRRIEAHEL 324 Query: 299 ESKEFGADSTVRALRVGEWIDITGHPELERHPPHEREFIVTRLEFHAENNLPASLDERLR 358 ++ A S VR+LR G I+GHP L+ E F VT+L +A N+L LD Sbjct: 325 AAQGCRARSVVRSLRAGTVFRISGHPHLDTLTEREARFTVTQLTLYARNSL--VLDAEWM 382 Query: 359 RATPHRESELGGLADLQRRCREQGLRYLNHFACVRRGIPLVPAFDPRVDLPRPRLQNAHV 418 P + L A L + Y N F CV+ +VP +DP D+P+ L +A V Sbjct: 383 --APLMKEWLPARAALGDQTALDLPVYCNGFDCVQSDTAIVPRYDPE-DVPKLGLMSAVV 439 Query: 419 VGPAGEELYCDALGRIKLRFHGTRMQDHQLAGGASDSERDSAWVRVASHWAGRQWGAINL 478 VG +E+ D LGRI +RF TR Q+H GAS + DSA +R+ WA +G Sbjct: 440 VGDGDKEVDVDELGRIAVRFLFTRPQEHPRGRGASGTTGDSARIRILQPWADAGFGTAFW 499 Query: 479 PRVGDEVLVDFLGGDPDKPIVIGRLYNGLSLPPAFSGVGSLPGNRFLAGVRSKEIQGQRY 538 PRVG E+L+ FL PDKP+ +G LY+G PP FS G LP N L+G+RSKE++ R+ Sbjct: 500 PRVGSEILIAFLQNHPDKPVALGGLYDGTHYPPKFSRQGKLPENSALSGIRSKELKANRH 559 Query: 539 NQLRLDDTPRQISAQLASQHGQSELNLGWLTHPRTEGRSDARGEGAELRTDQALALRGGQ 598 N L DD+ QISAQ+ S H ++LN GWL PRTEGRS RGEG EL TD A LR Sbjct: 560 NHLLFDDSRGQISAQMFSDHAATQLNQGWLGSPRTEGRSAPRGEGFELATDAAGCLRTAH 619 Query: 599 GVLISASRRSQASGAQLDRTEMLGLLRVLQNVQQELAELAETHHAGPTAVQSLSELRTRL 658 G+LI+A R ASG QL R E L L++ + + E A H A L +L Sbjct: 620 GLLITAFARLNASGNQLAREETLALMQQCVQLFTGIGEYAAQHQAKAGDHAPHERLHRQL 679 Query: 659 DAWETGSNTQAEGSGGGEPVVAVTAPAGVAITSDEGVVLGAQKEIDLVSVGNTQLSAGKK 718 WE GSNT+ + GG PVVAVTAPAG+ ++ E V A + D V++ + QL++G+ Sbjct: 680 QQWENGSNTKPDAGDGGAPVVAVTAPAGLHFSTPETAVTHAGENCDTVALRHIQLASGEH 739 Query: 719 LLVRVAESISVFAQRLGMRLVAASGKLQLQTHGDDIEATSARRIILT---------AVDE 769 L + IS+FAQ + L+A G+L+LQ+ +D + +A+ + LT A DE Sbjct: 740 LTANAGKGISLFAQSEDLTLIAHQGELKLQSQHNDTKVAAAKNLSLTASGGKVQIIAADE 799 Query: 770 IVLQAPRLKLLAQGAQIDLGGGAITQQSSADHIIRSANFHHVRGADSAPPGVELLASAMR 829 I+L A + G+ + LGGG I S I +A H A + P + A Sbjct: 800 ILLAA------SDGSYLRLGGGKIDMGCSGAATIHAAT-HRWIDAQTTPGELPTFAKD-D 851 Query: 830 TDERFILARRGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTALSQDQALRIARLRIV 886 + +LAR + R+ I+ DG G T++ GR A A R+R + Sbjct: 852 VGRKPVLARPTDDQKIAGVRFEIDSGDGGKTSGQTNDLGRAASLSKNAFEQMRIRFL 908 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 304 bits (779), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 266/898 (29%), Positives = 408/898 (45%), Gaps = 67/898 (7%) Query: 10 DALLIQQVTGRETLCGATEVEVLCLSPREDLPLKEFMAVPAEIQLVTDQGLLRTICGFIA 69 D LL Q++ E L EV + L+ + L++ +A P + + G + G++ Sbjct: 32 DILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPVTLWIRQHDGDTLPLHGYVH 91 Query: 70 EAHAGQIDGELSSYRLLLRDALSLMGQRINTRVFLHASEADVTQILISEWRQRSPLLASS 129 A DGEL +L L L + R + R++ D+ + + Q Sbjct: 92 TAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTEDILADVFNNHPQARGHYRFQ 151 Query: 130 MEVDWSLLGERYPAREFIMQHNESDADFLRRLWKRRGIGWCIRPGEPPLPGQAACPRHLL 189 +E Y R + Q+ E+D F++RL + G W + + H+L Sbjct: 152 LE-------RPYTPRPYCTQY-ETDWHFVQRLMEEEG--WFAHHEQ-----REDGSGHVL 196 Query: 190 VLFDDPMQLPRNAAGSVPWRRDHAPGTQDGLLRWQATRRLRAGSVSRHTWDHAQDGPLQR 249 V+ D+ LP + + D +L W A+R L S W D Sbjct: 197 VITDNTWNLPGLPQQGIAFHGAAPRDELDKILHWSASRTL-----SSKGWRGRSDDYKSP 251 Query: 250 HMNNPAAQGALGDRFAQL---LDDYLVEAPHIADDGEDLDQIARARMQRLALESKEFGAD 306 M A + + + + QL L+ Y + E ++ A ++++ + + A Sbjct: 252 GMKKEAEEQVMPE-YGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQVEQWESSMQRYSAV 310 Query: 307 STVRALRVGEWIDITGHPELERHPPHEREFIVTRLEFHAENNLPASLDERLRRATPHRES 366 S VR L G W + HP+ P ER+F++ +++ ENNLP S +A S Sbjct: 311 SGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPLS-----HQALDFPGS 365 Query: 367 ELGGLADLQRRCR----------EQGLRYLNHFACVRRGIPLVPA--FDPRVDLPRPRLQ 414 G L + R E N F RR +P PA V LP Q Sbjct: 366 LKGALMAFKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPARAHARPVMLP----Q 421 Query: 415 NAHVVGPAGEELYCDALGRIKLRFHGTRMQDHQLAGGASDSERDSAWVRVASHWAGRQWG 474 A VVGPA EE+Y D L RIK++F R+ +E S WVRV+ AG+ WG Sbjct: 422 TAIVVGPASEEVYTDHLDRIKVQFRWDRIN--------PGNEAASCWVRVSYPNAGQYWG 473 Query: 475 AINLPRVGDEVLVDFLGGDPDKPIVIGRLYNGLSLPPAFSGVGSLPGNRFLAGVRSKEIQ 534 AI +PR+G EV+V FL GDPD+P+V GRL+N P + N L+GV+SKE Sbjct: 474 AIQVPRIGQEVIVSFLNGDPDRPVVTGRLFNAEQRPQWHT-------NGRLSGVKSKEFG 526 Query: 535 GQRYNQLRLDDTPRQISAQLASQHGQSELNLGWLTHPRTEGRSDARGEGAELRTDQALAL 594 G +NQ+ +DDTP Q L S + ++LNLG L R G G L TD A+ Sbjct: 527 GTGFNQMVMDDTPEQNRIHLYSTNTHAQLNLGHLVSQTGNERRSFFGSGFALSTDAYGAI 586 Query: 595 RGGQGVLISASRRSQASGAQLDRTEMLGLLRVLQNVQQELAELAETHHAGPTAVQSLSEL 654 +G+ IS R A G QLD E G L+ N+ + L+E A A P A Q L Sbjct: 587 VTHKGLYISTYGRPGAQGTQLDAREATGQLKSGANLSRTLSETAAKAGAEPLAGQ--EAL 644 Query: 655 RTRLDAWETGSN--TQAEGSGGGEPVVAVTAPAGVAITSDEGVVLGAQKEIDLVSVGNTQ 712 R +DA + +QA+ + + ++ +P G+ +T+ +GV A EI L S +T Sbjct: 645 RDFIDATQADYEDPSQAQANRFQQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTS 704 Query: 713 LSAGKKLLVRVAESISVFAQRLGMRLVAASGKLQLQTHGDDIEATSARRI-ILTAVDEIV 771 ++ GK LL VAE IS+FA + G++L +A GK+++Q DD+E + + +L+A + Sbjct: 705 IAVGKSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVE 764 Query: 772 LQAPRLKLL-AQGAQIDLGGGAITQQSSADHIIRSANFHHVRGADSAPPGVELLASAMRT 830 ++A L+ A G+ I L ITQ +S + A H + G + + ++A+ Sbjct: 765 IRAKEEVLITAGGSFIRLNASGITQGTSGAWEAK-AGTHAMPGPTTLAYEMNKSSAALPF 823 Query: 831 DERFILARRGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTALSQDQALRIARLRIVKE 888 DE F+L P +R+ I DG+ + GVTD QG+T L + + LRI+ E Sbjct: 824 DEEFVLRWPYDQSPVKNRRFEIVRGDGTKVRGVTDAQGKTGLQKSLFVENTSLRILPE 881 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 300 bits (767), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 259/893 (29%), Positives = 417/893 (46%), Gaps = 88/893 (9%) Query: 10 DALLIQQVTGRETLCGATEVEVLCLSPREDLPLKEFMAVPAEIQLVTDQGLLRTICGFIA 69 D LL Q++ G E L + + +S R+D+ LK+ +A P + L D + G++ Sbjct: 44 DVLLPQRMVGSERLGRGYDYTIDLVSTRDDIELKKLIAQPVTLWLQQDGSDYAPLHGYVH 103 Query: 70 EAHAGQIDGELSSYRLLLRDALSLMGQRINTRVFLHASEADVTQILISEWRQRSPLLASS 129 A DG+L+S+++ + L + R + R++ S+AD IL + Q + + Sbjct: 104 TARRLGSDGQLASFQIGMAPWLHFLKYRKDARIW-QDSKAD--DILADVFDQHA---YAR 157 Query: 130 MEVDWSLLGERYPAREFIMQHNESDADFLRRLWKRRGIGWCIRPGEPPLPGQAACPRHLL 189 + ++ P R + Q+ E+D F++RL + G + +P G H+L Sbjct: 158 GNYRFEIVTPALP-RSYCTQY-ETDWHFVQRLMEEEGW-YAYHEQKPDGSG------HVL 208 Query: 190 VLFDDPMQLPRNAAGSVPWRRDHAPGTQDG---LLRWQATRRLRAGSVSRHTWDHAQDGP 246 V+ D+ Q A + + H GTQD +L W A+R L + ++ T D+ G Sbjct: 209 VITDNTDQAKPLAPEQLAF---HGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGD 265 Query: 247 LQRHMNNPAAQ-GALGDRFAQLLDDYLVEAPHIADDGEDLDQIARARMQRLALESKEFGA 305 ++ + GAL L+ Y P+ +D D+ AR R+++ K F Sbjct: 266 QKQTQERVLPEHGALPGE----LEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMG 321 Query: 306 DSTVRALRVGEWIDITGHPELERHPPHEREFIVTRLEFHAENNLP---------ASLDER 356 S R L G W +T HP + +F++ +E+ ENNLP SL + Sbjct: 322 VSGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTARDFPGSLKPQ 381 Query: 357 LR--RATPHRESELGGLADLQRRCREQGLRYLNHFACVRRGIPLVPAFDPRVDLPRPRLQ 414 L +A+ R ++ G C N F RR +P FD + P Q Sbjct: 382 LDAFKASMGRSNDDAGGNARTGHC-------FNRFEVQRRKLPYRSPFDHTKPVMHP--Q 432 Query: 415 NAHVVGPAGEELYCDALGRIKLRFHGTRMQDHQLAGGASDSERDSAWVRVASHWAGRQWG 474 A VVGP GEE++ D L R+K++F R+ E+ S WVRV+ AG WG Sbjct: 433 TAVVVGPQGEEVFTDKLNRVKVQFRWDRIN--------PGDEKASCWVRVSYPNAGENWG 484 Query: 475 AINLPRVGDEVLVDFLGGDPDKPIVIGRLYNGLSLPPAFSGVGSLPGNRFLAGVRSKEIQ 534 + +PRVG E+++ FL GDPD+P+ GRL+N PP + G L +G++SKE Sbjct: 485 EVKVPRVGQELIISFLNGDPDRPVATGRLFN-QEQPPQWHTDGRL------SGLKSKEFG 537 Query: 535 GQRYNQLRLDDTPRQISAQLASQHGQSELNLGWLTHPRTEGRSDARGEGAELRTDQALAL 594 G +NQL +DDT Q L S ++LNLG+L R + G G L TD A+ Sbjct: 538 GNGFNQLVMDDTTSQNRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAV 597 Query: 595 RGGQGVLISASRRSQASGAQLDRTEMLGLLRVLQNVQQELAELAETHHAGPTAVQSLSEL 654 +G+ +S+ R G QLD +E L++ ++ + L++ A A A SL + Sbjct: 598 VTQKGLYLSSYGRPGPQGTQLDASEATSLMKASADLARGLSDSASRAGAEALAQDSLKDF 657 Query: 655 RTRLDAWETGSNTQAEGSGG--GEPVVAVTAPAGVAITSDEGVVLGAQKEIDLVSVGNTQ 712 +DA E + Q +GS +P++ + APAG+ + +D+G + + +E L S +T Sbjct: 658 ---VDATEDKYSGQGQGSANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTS 714 Query: 713 LSAGKKLLVRVAESISVFAQRLGMRLVAASGKLQLQTHGDDIE---------ATSARRII 763 +++GK LL V E IS+FAQ GM+L AA GK+++Q DD++ +++ R+ Sbjct: 715 IASGKSLLATVKEKISLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVE 774 Query: 764 LTAVDEIVLQAPRLKLLAQGAQIDLGGGAITQQSSADHIIRSANFHHVRGADS---APPG 820 + A DE+++ A G+ I + ITQ + + A+ H + G S P Sbjct: 775 IHAKDEVMIS-------AGGSFIQINSAGITQGTPGKWEAK-ASLHSMPGPASQNFVMPH 826 Query: 821 VELLASAMRTDERFILARRGSGRPHVRQRYRIELDDGSVIEGVTDEQGRTALS 873 V+ S ++ + G P Y+ L DGSV +G D QG LS Sbjct: 827 VQ--KSELQPSDMEFRHLTDWGEPLAGAAYKAILSDGSVRKGTLDAQGIARLS 877 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,847,076 Number of extensions: 126671 Number of successful extensions: 429 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 377 Number of HSP's successfully gapped: 12 Length of query: 888 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 794 Effective length of database: 1,174,780 Effective search space: 932775320 Effective search space used: 932775320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)