BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0176.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309364|ref|YP_003773456.1| membrane protein [Herbaspirillu...   349   1e-97

>gi|300309364|ref|YP_003773456.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 425

 Score =  349 bits (896), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/216 (79%), Positives = 194/216 (89%)

Query: 1   MVEWLQREYPKIEKLLPSNWIGEKSADTLADILDKLLTGIAEDPQHSLRQAFDRQLAGFV 60
           MV+WL++EYPKIEK+LPS WIGEKSA TLADILDKLL+GIAEDPQHSLR+AFD Q+A F+
Sbjct: 210 MVDWLRQEYPKIEKILPSQWIGEKSAQTLADILDKLLSGIAEDPQHSLRRAFDEQVARFI 269

Query: 61  MRLKEDPALRERAEEIKREILQGEAVNAYVGSLWDSLRQWLRQDLARLDSALHAQASAAT 120
           +RLKEDPALRERA+  KRE+L+GEAV+AYVG LWDSLRQWLR DL R DS L   A  AT
Sbjct: 270 VRLKEDPALRERADTFKRELLEGEAVHAYVGGLWDSLRQWLRADLERSDSVLRRHAQDAT 329

Query: 121 QWIGRALQEDAELRASLNAHLEQAIASLSPDVAQLLTRHISDTIKQWDTAELSRQIELNI 180
           QWIG+ALQ+DA LRASLN HLE AIASLSP++AQLL+RHISDTI+QW+T ELSRQ+ELNI
Sbjct: 330 QWIGQALQDDAALRASLNTHLEHAIASLSPELAQLLSRHISDTIRQWETVELSRQVELNI 389

Query: 181 GRDLQYIRINGTLVGGLIGALLFGLSWLMQWLVHGV 216
           GRDLQ+IRINGTLVG LIGA+LFGLS LMQWLVHGV
Sbjct: 390 GRDLQFIRINGTLVGALIGAVLFGLSALMQWLVHGV 425


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 718,754
Number of extensions: 27725
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)