BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0169.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309359|ref|YP_003773451.1| hypothetical protein Hsero_0013...   429   e-121

>gi|300309359|ref|YP_003773451.1| hypothetical protein Hsero_0013
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  429 bits (1104), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 202/292 (69%), Positives = 238/292 (81%), Gaps = 6/292 (2%)

Query: 1   MSLLCAASPRAQS------PAANAQVIEIKLADLNDDNPLINYRKAVLELAMRASGRPFS 54
           M L+CA    AQS      PA N   IEIKLADLNDDNPLINYRKAV+ELAMRASG+ ++
Sbjct: 20  MGLVCARPAIAQSTTISPAPAGNESTIEIKLADLNDDNPLINYRKAVIELAMRASGKSYT 79

Query: 55  IKGCRVANVATSDQRYVQLIQAGQYCNLITTSAGSGMTRTLEPIPFPIYLGGGGYRVLLA 114
           + GC++   +TSD+R+VQLIQAGQYCNL+ TSAG  +TR LE IPFPIYLGGGG RVLLA
Sbjct: 80  LTGCQITEASTSDRRFVQLIQAGQYCNLMATSAGGELTRGLETIPFPIYLGGGGIRVLLA 139

Query: 115 RRESLEPARSIRTLADLRAFTIGSGIGWVDTSIMQANQLKVAQSNYLNLFEMLKAGRFDF 174
            R+SLE A ++R+L DLR F IGSG GWVDTSIMQAN L V QS+Y+NLFEMLKA RFDF
Sbjct: 140 HRKSLEAATTLRSLNDLRKFRIGSGSGWVDTSIMQANGLTVVQSSYMNLFEMLKAQRFDF 199

Query: 175 YNRSIFEATSELEAYDSAHQLAIVPDLVLYYPTDLFFYTSPGRDDIRDALLEGLKKIHRN 234
           YNRS+FEA  ELE YD  HQLA+VPDL+LYYP+DLFFYT+PGRDDIRDALL+GL+KI RN
Sbjct: 200 YNRSVFEAVGELENYDPQHQLAVVPDLILYYPSDLFFYTTPGRDDIRDALLDGLRKIQRN 259

Query: 235 GALLDLIQKHSSTRQVRQAMRGTRPRVIELHNDRLTPIERQAIETYKMDWFK 286
           GAL +LIQ H STR  R A++  + RV+ L N+RLTPIER+A+ETYK+DWF+
Sbjct: 260 GALAELIQNHRSTRNARVALKSGKLRVLALTNERLTPIEREALETYKLDWFR 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 833,443
Number of extensions: 33273
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)