BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0166.p
         (484 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313371|ref|YP_003777463.1| hypothetical protein Hsero_4085...   731   0.0  

>gi|300313371|ref|YP_003777463.1| hypothetical protein Hsero_4085
           [Herbaspirillum seropedicae SmR1]
          Length = 1383

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/445 (79%), Positives = 387/445 (86%)

Query: 1   LTTINFKNIRSTPTSQRDSFEAMSVQLFRKCTNVPNNSSFISLRGDGGDGGVEAYFRTPA 60
           +TTINFKNIRSTPTSQRDSFEA+SVQLFRKC  +P NSSFISLRGDGGDGGVEAYFRTP 
Sbjct: 1   MTTINFKNIRSTPTSQRDSFEALSVQLFRKCAKIPTNSSFISLRGDGGDGGVEAYFRTPT 60

Query: 61  GTVIGVQAKYFFKLDAPELAQIADSLSTALSNHPALVEYHIYLPFDLTGRSGAGKRGKSQ 120
            TVIGVQAKYFFKLDAPEL QIADSLS ALSNHP L EYHIY+PFDLTGR  AGKRGKSQ
Sbjct: 61  DTVIGVQAKYFFKLDAPELTQIADSLSAALSNHPTLAEYHIYIPFDLTGRVAAGKRGKSQ 120

Query: 121 AERFEEWKDMVESAAAASGQSLRVVLLAAASIQIQLQEIDKYGGMRRYWFDETTISTHQI 180
           AERFEEWK  VESAAA SG+ L ++L  AASIQ QLQEID YGG+RRYWFDETTI++HQI
Sbjct: 121 AERFEEWKTKVESAAAESGRPLLIILATAASIQSQLQEIDIYGGVRRYWFDETTITSHQI 180

Query: 181 EQLLQQAIEFAGPRYTADLDIETHAHPVLDIFSGIGDYRTWADESLSPYISKLRSTHGYG 240
             LLQQAIEFAGPRYTADLDIETHAH VLDIFSGIGDY TW +ESL P+IS+L+STH YG
Sbjct: 181 GHLLQQAIEFAGPRYTADLDIETHAHTVLDIFSGIGDYHTWVNESLEPHISRLQSTHDYG 240

Query: 241 TESFKILPASDKTKVTALLDELLAVLNGLEYKSSDDLSSRALDLLEQLAPQLNEVRSLQE 300
            ES +ILP  D+T+       +           SD  SSR L+LLEQL+P L+E RSLQE
Sbjct: 241 EESLQILPEEDRTQDRGAFGRIARAPECSGEGKSDVASSRTLELLEQLSPLLSEHRSLQE 300

Query: 301 LAFYKEHGPNADTPGFRQFHSEINVSFPAQGMDSAREYERICNEIQHVLTSGEYRASTVS 360
            AF+K+HGPN+DTPGFRQFH+E NVSFPAQGMDSAR YE++CNE++ VLTSGE+RASTVS
Sbjct: 301 TAFFKQHGPNSDTPGFRQFHAEYNVSFPAQGMDSARTYEKVCNELKRVLTSGEFRASTVS 360

Query: 361 SLLLTGSASIGKTHAIISAASRRVKRGGMSLVVFGENFDGKEPWEVLRSKLGYGSNVGQD 420
           SLLLTGSASIGKTHAIISAA+RR+KRGGMSLVVFGENFDGKEPWEVLRSKLGYGSN+GQD
Sbjct: 361 SLLLTGSASIGKTHAIISAANRRLKRGGMSLVVFGENFDGKEPWEVLRSKLGYGSNMGQD 420

Query: 421 ELFETLQSSADHTGLPFVIFIDALN 445
           ELFETLQSSA+HTGLPFVIFIDALN
Sbjct: 421 ELFETLQSSAEHTGLPFVIFIDALN 445


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,388,300
Number of extensions: 55637
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 395
Effective length of database: 1,198,455
Effective search space: 473389725
Effective search space used: 473389725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)