BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0164.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillu...   530   e-152
gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillu...   134   8e-33

>gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 302

 Score =  530 bits (1366), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 251/299 (83%), Positives = 273/299 (91%)

Query: 6   PALTADTFTTVSPEPMLLGESPVWHAEEAALYWIDIPGKAVHKRVLATQQHQRWDMPEEP 65
           P+ +A   T   PEPMLLGESP+WHA+EAALYWIDIPGKAVH+    + QH+RWD+PEEP
Sbjct: 4   PSPSAAAVTVAFPEPMLLGESPLWHAQEAALYWIDIPGKAVHRLHPESGQHKRWDLPEEP 63

Query: 66  GSIVKHAQGGLVVALRSGMFHLNTGNGALTALLEAPYDMARIRFNDGRCDASGRFWCGTI 125
           GSIV+HAQGGLVVA+R+GMFHLNT  GALT LL APYD +RIRFNDGRCDASGRFWCGTI
Sbjct: 64  GSIVRHAQGGLVVAIRTGMFHLNTDTGALTLLLAAPYDSSRIRFNDGRCDASGRFWCGTI 123

Query: 126 YEPRDRDGGTLYCFERNALRDAHHAVVTSNGVAFSPDQRLMYHANTPAHRINVYDYDLAT 185
           YEPRDRDGGTLYCFERNALRDAHHAVVTSNG+AFS DQRLMYHANTPAHRIN+YDYDLAT
Sbjct: 124 YEPRDRDGGTLYCFERNALRDAHHAVVTSNGLAFSSDQRLMYHANTPAHRINLYDYDLAT 183

Query: 186 GQTSNCRLLRQFDSDKTASGYGGRPDGAAVDSEGAYWCAMFEGGRVLRLSPQGEILQEIR 245
           G TSNCRLLRQFDSDK+A  YGGRPDGAAVDS+GAYWCAMFEGGRVLRLSPQGEILQEIR
Sbjct: 184 GATSNCRLLRQFDSDKSAPDYGGRPDGAAVDSQGAYWCAMFEGGRVLRLSPQGEILQEIR 243

Query: 246 VPARCPTMVAFGDEDLRTLFITTGRNGRSEAELAQYPLSGHVLAIRVEVAGRLEYSYRP 304
           +PARCPTMVAFG +DLRTL+ITTGRNGRS AELAQYP SG VLA+RV+V G+LEYSYRP
Sbjct: 244 LPARCPTMVAFGGDDLRTLYITTGRNGRSPAELAQYPESGCVLAVRVDVPGQLEYSYRP 302


>gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  134 bits (337), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 126/274 (45%), Gaps = 15/274 (5%)

Query: 23  LGESPVWHAEEAALYWIDIPGKAVHKRVLATQQHQRWDMPEEPGSIVKHAQ-GGLVVALR 81
           LGE  +W     +++W DI    +      T   + W MPE        A    L++ L 
Sbjct: 13  LGEGVLWCDRSQSVFWTDIHASRLWNHDPQTGLTRSWGMPERLCCYAFTADPQQLLIGLE 72

Query: 82  SGMFHLNTGNGALTALLEAPYDMARIRFNDGRCDASGRFWCGTIYEPRDRDGGTLYCFER 141
           S +   N   G +  +     D+   R NDGRCD  GRF  GT+ E   R    +  F R
Sbjct: 73  SRLAFFNLSTGTIAPICRIEDDLPSTRLNDGRCDRQGRFVFGTLNEDAGR--APIASFYR 130

Query: 142 -----NALRDAHHAVVTSNGVAFSPDQRLMYHANTPAHRINVYDYDLATGQTSNCRLLRQ 196
                   R +  ++  SN + FS D +LMYH ++ A +I V DYD A+G     R+   
Sbjct: 131 LNTDLTLERLSLPSIAISNSICFSLDGKLMYHCDSMAGKIMVCDYDTASGAVGGQRVFAD 190

Query: 197 FDSDKTASGYGGRPDGAAVDSEGAYWCAMFEGGRVLRLSPQGEILQEIRVPARCPTMVAF 256
                      G PDG+ +D+EG  W A + G RV+R +P G I + + +P   P+ VAF
Sbjct: 191 V-------AQPGGPDGSTIDAEGYLWNAQWGGARVVRYAPDGRIDRVVAIPTSQPSCVAF 243

Query: 257 GDEDLRTLFITTGRNGRSEAELAQYPLSGHVLAI 290
           G     TL++TT   G S  + A  P +G + A+
Sbjct: 244 GGAQFDTLYVTTAHEGMSAEQRAADPQAGALFAV 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,091,811
Number of extensions: 51093
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)