BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0161.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313170|ref|YP_003777262.1| altronate hydrolase [Herbaspiri...   712   0.0  
gi|300312450|ref|YP_003776542.1| D-galactarate dehydratase [Herb...   213   1e-56

>gi|300313170|ref|YP_003777262.1| altronate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 511

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/347 (98%), Positives = 344/347 (99%)

Query: 1   VALTHGQGCATDSQGEPLQILRRTLAGYATHPNFAAVLVVGLGCETNQISGLMESHNLKE 60
           VALTHGQGCA DSQGEPLQILRRTLAGYATHPNFAAVLVVGLGCETNQISGLMESHNLKE
Sbjct: 165 VALTHGQGCALDSQGEPLQILRRTLAGYATHPNFAAVLVVGLGCETNQISGLMESHNLKE 224

Query: 61  GEYFHTFTIQGTGGTAKTVALGIEKIKKMLPKANDIKREPVSAKHLTLGLQCGGSDGYSG 120
           GEYFHTFTIQGTGGTAKTVALGIEKIKKMLPKANDIKREPVSAKHLTLGLQCGGSDGYSG
Sbjct: 225 GEYFHTFTIQGTGGTAKTVALGIEKIKKMLPKANDIKREPVSAKHLTLGLQCGGSDGYSG 284

Query: 121 ITANPALGAAVDLLVRHGGTAILSETPEIYGAEHLLTRRAVSPEVGEKLLARIAWWEEYC 180
           ITANPALGAAVDLLVRHGGTAILSETPEIYGAEHLLTRRAVSPEVGEKLLARIAWWEEYC
Sbjct: 285 ITANPALGAAVDLLVRHGGTAILSETPEIYGAEHLLTRRAVSPEVGEKLLARIAWWEEYC 344

Query: 181 AKNDAEMNNNPSAGNKAGGLTTILEKSLGAVAKGGTTNLVDVYKYAETVTARGFVFMDTP 240
           AKNDAEMNNNPSAGNKAGGLTTILEKSLGAVAKGGTTNLVDVYKYAE VTARGFVFMDTP
Sbjct: 345 AKNDAEMNNNPSAGNKAGGLTTILEKSLGAVAKGGTTNLVDVYKYAEAVTARGFVFMDTP 404

Query: 241 GYDPISATGQVAGGANMICFTTGRGSAYGCAPAPSLKLATNTALWQRQEEDMDINCGEIA 300
           GYDPISATGQVAGGANMICFTTGRGSAYGCAPAPSLKLATNTALWQRQEEDMDINCGEIA
Sbjct: 405 GYDPISATGQVAGGANMICFTTGRGSAYGCAPAPSLKLATNTALWQRQEEDMDINCGEIA 464

Query: 301 DSNVTPQEVGERFFQMILDTASGKKTKSELHGYGQDEFVPWHIGVYT 347
           D NVTPQE+GERFFQMILDTASGKKTKSELHGYGQDEFVPWHIGVYT
Sbjct: 465 DGNVTPQEIGERFFQMILDTASGKKTKSELHGYGQDEFVPWHIGVYT 511


>gi|300312450|ref|YP_003776542.1| D-galactarate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 522

 Score =  213 bits (543), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 185/335 (55%), Gaps = 15/335 (4%)

Query: 1   VALTHGQGCATDSQGEPLQILRRTLAGYATHPNFAA-VLVVGLGCETNQISGLMESHNL- 58
           VAL H  GC          I  RTL   + +PNF    +VV LGCE  Q + L+  + + 
Sbjct: 171 VALEHTYGCGVAIDAPNAGIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIP 230

Query: 59  --KEGEYFHTFTIQGTGGTAKTVALG--IEKIKKM----LPKANDIKREPVSAKHLTLGL 110
             K+GE +    +Q     A+ V     I+ I  M    L + N  +RE   A  L +G+
Sbjct: 231 IHKQGEPY-VVCLQ----DAEHVGFNSMIDSIMNMAEARLTELNKRRRETCPASDLVVGV 285

Query: 111 QCGGSDGYSGITANPALGAAVDLLVRHGGTAILSETPEIYGAEHLLTRRAVSPEVGEKLL 170
           QCGGSD +SG+TANPA+G A DLLVR G + + SE  E+      LT RAV+ EV + ++
Sbjct: 286 QCGGSDAFSGVTANPAVGFATDLLVRAGASVMFSEVTEVRDGIDQLTSRAVNEEVAQAMI 345

Query: 171 ARIAWWEEYCAKNDAEMNNNPSAGNKAGGLTTILEKSLGAVAKGGTTNLVDVYKYAETVT 230
             + W++ Y  +   + + N + GNK GGL  I+EK++G++ K G++ +  V    + + 
Sbjct: 346 REMDWYDNYLKQGGVDRSANTTPGNKKGGLANIVEKAMGSIVKSGSSPISGVLSPGDKLQ 405

Query: 231 ARGFVFMDTPGYDPISATGQVAGGANMICFTTGRGSAYGCAPAPSLKLATNTALWQRQEE 290
            +G ++  TP  D I  T Q+A G N+  FTTGRG+ YG A  P +K+AT   L +R  +
Sbjct: 406 QKGLIYAATPASDFICGTLQLAAGMNLHIFTTGRGTPYGLAAVPVIKVATRNDLARRWHD 465

Query: 291 DMDINCGEIADSNVTPQEVGERFFQMILDTASGKK 325
            MD+N G IA    + ++VG   FQ++LD ASGKK
Sbjct: 466 LMDVNAGRIASGEASIEDVGWELFQLMLDVASGKK 500


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,219,394
Number of extensions: 54629
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)