BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0158.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 483 e-138 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 341 3e-95 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 322 2e-89 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 299 1e-82 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 293 1e-80 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 483 bits (1243), Expect = e-138, Method: Compositional matrix adjust. Identities = 235/244 (96%), Positives = 240/244 (98%) Query: 1 MSAIVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGN 60 MSAIVKI DLHKSFGSNKVLNGVSLDV+KGQMVAIIGKSGSGKSTLLRCLNGLEKVD G+ Sbjct: 1 MSAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 61 IHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKI 120 I VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTE+AK I Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTI 120 Query: 121 AHKVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 AHKVLQLVGLENKK+AYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL Sbjct: 121 AHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 Query: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFV 240 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFS+PKTAELQKFV Sbjct: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFV 240 Query: 241 SSDL 244 SSDL Sbjct: 241 SSDL 244 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 341 bits (875), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 162/239 (67%), Positives = 204/239 (85%), Gaps = 1/239 (0%) Query: 4 IVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGNIHV 63 IV+IN++ K FGSN+VLNG+SL VE+GQ+VAIIG+SGSGKST+LRC+NGLE +DGG+I V Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKIAHK 123 GH + H + +L ELRK VG+VFQ YNLFPHLTVE NI L+ +KK +TE A++ A K Sbjct: 63 AGHKLTHKHE-HLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIK 121 Query: 124 VLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 VL+ VGL++K++AYPEQLSGGQ QRVAIARSLAM P++MLFDEVTSALDPELTAEVLKVM Sbjct: 122 VLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVM 181 Query: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFVSS 242 E+LARGGMTM+LVTHEM FAR++AD+ VFMHQG+VWE P +E F++P+T E ++F+ + Sbjct: 182 EELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 322 bits (825), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 157/244 (64%), Positives = 190/244 (77%), Gaps = 2/244 (0%) Query: 1 MSAIVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGN 60 M +V++ +HK FGSN VL GVS V +G++VAIIGKSGSGKST LRC+N LE++D G Sbjct: 1 MHTVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQ 60 Query: 61 IHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKI 120 I VCGH +H L+LR LR+ VGIVFQ YNLFPHLTV +NITL T +K+M ++A+ + Sbjct: 61 ISVCGHALHAAG-LDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTL 119 Query: 121 AHKVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 A +VL VGL +K AYPEQLSGGQ QRVAIARSLA+ P+LMLFDEVTSALDPELT EVL Sbjct: 120 AQQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVL 179 Query: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFV 240 KVME +A GMTM+LVTHEMAFAR++AD ++FMHQGQVWE G P E+ P T EL+ FV Sbjct: 180 KVMEQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGP-EILDAPVTPELRSFV 238 Query: 241 SSDL 244 + L Sbjct: 239 GTGL 242 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 299 bits (766), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 147/241 (60%), Positives = 192/241 (79%), Gaps = 2/241 (0%) Query: 4 IVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGNIHV 63 IVK++ ++KSFG N+VL GVS +V +G+M+AIIG SGSGKST LRC++ LE +D G+I V Sbjct: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKIAHK 123 G + P +++L +LR++VGIVFQSYNLFPHL V N+ LAL +K+ EA+++A Sbjct: 86 AGIRVDDP-QVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALA 144 Query: 124 VLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 L VGL+ K AYPEQLSGGQ QRVAIARSLAMAP++MLFDEVTSALDP+LT EVL+VM Sbjct: 145 ALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVM 204 Query: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFVSSD 243 EDLA GMTM+LVTHEM FA+++AD +++MHQG+VWE+G P E+ +P T ELQ F+++D Sbjct: 205 EDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVG-PGEMLDHPYTPELQAFLAAD 263 Query: 244 L 244 L Sbjct: 264 L 264 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 293 bits (750), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 142/237 (59%), Positives = 186/237 (78%), Gaps = 1/237 (0%) Query: 4 IVKINDLHKSFGSNKVLNGVSLDVEKGQMVAIIGKSGSGKSTLLRCLNGLEKVDGGNIHV 63 ++ I+++ K FG N+VL G+SLDVE G+++AIIGKSGSGKSTLLRC+NGLE +D GNI V Sbjct: 3 LIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEEAKKIAHK 123 G + +L LR LR +VG++FQ +NLFPHL+V RN+ +A +K +S EA K A Sbjct: 63 AGAKLGA-SELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKA 121 Query: 124 VLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 L+ VGL +K +AYP+QLSGGQ QRVAIAR+L+M+P+ +L DE+TSALDPEL EVL VM Sbjct: 122 NLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVM 181 Query: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSNPKTAELQKFV 240 LA+ GMT+++VTHEM FAR++ + LVFMHQG+V EIGPP+ELF NPKT ELQ+F+ Sbjct: 182 RGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFI 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 713,706 Number of extensions: 27501 Number of successful extensions: 533 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 287 Number of HSP's successfully gapped: 143 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)