BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0156.p (227 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm... 437 e-124 gi|300309585|ref|YP_003773677.1| amino acid ABC transporter perm... 251 3e-68 gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 243 9e-66 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 222 2e-59 gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 192 1e-50 >gi|300313166|ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 437 bits (1125), Expect = e-124, Method: Compositional matrix adjust. Identities = 219/227 (96%), Positives = 222/227 (97%) Query: 1 MNYTFEFMSVFANWDRLLMGAWLTIQLSALSIALGFVVGTLGAIAGKSRLALVRGLVQAY 60 MNYTF+FMSVFANWDRLLMGAWLTIQLSALSI LGF VGTL AIAGKSRLALVRGLV AY Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLTAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VEIIRNTPLLVQVFLVFFGLASIGWKL+AETAAVIALTVNVGAYTTEIMRAGINSIHPGQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QSETFRSFEVYAVIAVAYLALSFLFRGAFWAISQMAFVRKRKLGTNL 227 QSETFRSFEVYAVIAVAYL LSFLFRGAFWAISQ+AFVRKRKLGTNL Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 >gi|300309585|ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 251 bits (642), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 129/227 (56%), Positives = 167/227 (73%) Query: 1 MNYTFEFMSVFANWDRLLMGAWLTIQLSALSIALGFVVGTLGAIAGKSRLALVRGLVQAY 60 M+Y F+F SV A+W LL GAW T+QLS L+ LGFV+G A+A SR +R V Y Sbjct: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLTAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE+IRNTPLL+Q + + FGL+S+G + A +AL +N+GAY+ EI+RAG+ SIH GQ Sbjct: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAA CLG+S V+WHVVLLPAVERV+P+LTSQF+L+MLASSI S + AEEL AN V Sbjct: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 Query: 181 QSETFRSFEVYAVIAVAYLALSFLFRGAFWAISQMAFVRKRKLGTNL 227 QS+TFR+FEV+ ++ AYLAL+ L R FW + Q+ F R+RKLGT L Sbjct: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 243 bits (620), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 130/224 (58%), Positives = 169/224 (75%) Query: 1 MNYTFEFMSVFANWDRLLMGAWLTIQLSALSIALGFVVGTLGAIAGKSRLALVRGLVQAY 60 M Y F+F +F + D+LL+GA LTI+LSALS+ G VG GAI R V +Y Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLTAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE+IR+TP LVQ+F++FFGL SIG ++ A AA++A+TVN+GAY+TEI+RAG+ +IHP Q Sbjct: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAA+ L M+R+ V HVVL PA+E+VYP+L SQF L+MLASSI S ISAEELTATANL+ Sbjct: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 Query: 181 QSETFRSFEVYAVIAVAYLALSFLFRGAFWAISQMAFVRKRKLG 224 +ETFRSFE+Y V+ V Y+ L+ LFR AFW I + F R+R+LG Sbjct: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLG 224 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 222 bits (565), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 110/218 (50%), Positives = 156/218 (71%), Gaps = 2/218 (0%) Query: 1 MNYTFEFMSVFANWDRLLMGAWLTIQLSALSIALGFVVGTLGAIAGKSRLA-LVRGLVQA 59 MN++ +F + W L GAWLT++++ L++ +G +G A A S L RG A Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARG-CSA 59 Query: 60 YVEIIRNTPLLVQVFLVFFGLASIGWKLTAETAAVIALTVNVGAYTTEIMRAGINSIHPG 119 Y+E++RNTP LVQ+FL++FGLAS+G ++ AAV+A+ +N+ AY EI+RAG++S+ G Sbjct: 60 YIEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRG 119 Query: 120 QIEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANL 179 QIEAA+CLG+S + + WHV+L PA+ERVYP+LTSQF+L+M AS++ SQISAEELTA AN Sbjct: 120 QIEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANT 179 Query: 180 VQSETFRSFEVYAVIAVAYLALSFLFRGAFWAISQMAF 217 VQS+TFRS E Y V+A YL L+ L + +AI + F Sbjct: 180 VQSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIF 217 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 192 bits (489), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 139/206 (67%) Query: 1 MNYTFEFMSVFANWDRLLMGAWLTIQLSALSIALGFVVGTLGAIAGKSRLALVRGLVQAY 60 M Y F+F+S F D ++ G TI+L A+ LG VG GA A ++ +V Y Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLTAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VEIIRNTP LVQ+F +FFGL S+ ++ TAA++A+ +N+GAY+TEI+RAG+ +I GQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAA+ L MSR ++ H++L PA+++++P+L+SQ +++ML S++ SQI+ EEL+ AN + Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QSETFRSFEVYAVIAVAYLALSFLFR 206 Q FR+FE Y V YL L+ L R Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLR 206 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 532,303 Number of extensions: 17024 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 20 Length of query: 227 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 145 Effective length of database: 1,231,600 Effective search space: 178582000 Effective search space used: 178582000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)