BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0155.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313165|ref|YP_003777257.1| hypothetical protein Hsero_3871...   603   e-174

>gi|300313165|ref|YP_003777257.1| hypothetical protein Hsero_3871
           [Herbaspirillum seropedicae SmR1]
          Length = 339

 Score =  603 bits (1556), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 293/331 (88%), Positives = 304/331 (91%)

Query: 1   VRLIQYRDLHGQRRVGIVNGASIQVLGEVDTMRELGLLAIERHTGLERLAQLLNTDRSED 60
           VRLIQYRD  G+RRVGIVNG  IQ L +V TMREL LLA++R  GLER AQLLNTDR ED
Sbjct: 9   VRLIQYRDRAGERRVGIVNGGQIQALDQVATMRELALLALQRGIGLERQAQLLNTDRCED 68

Query: 61  YAAILAEGRILAPLDHPDPAHCRVSGAGTTHLGSATTRDKMHRRIEGDELDKTDTQLMIE 120
           YAAILAEGRILAPLDHPDPAHCR+SGAGTTHLGSATTRDKMHRRIEGDELDKTDTQLMIE
Sbjct: 69  YAAILAEGRILAPLDHPDPAHCRISGAGTTHLGSATTRDKMHRRIEGDELDKTDTQLMIE 128

Query: 121 WGIAGGRPAPGTVGVQPEWFYKGDGHCIVAPGQPLPRPDFALDGGEEPEIVGLYLIDDAG 180
           WGIAGGRPA G  GVQPEWFYKGDG  IVAPG  LPRPDFALDGGEEPEIVGLYLID+ G
Sbjct: 129 WGIAGGRPAAGEAGVQPEWFYKGDGSSIVAPGAALPRPDFALDGGEEPEIVGLYLIDEEG 188

Query: 181 CPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHCAFGPELLVGLPPAHLVGMTRIRRRGR 240
           CPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHC+FGPELLVGLPPAHLVGMTRIRR GR
Sbjct: 189 CPRRLGFAIGNEFSDHVMERRNYLYQGHSKLRHCSFGPELLVGLPPAHLVGMTRIRRNGR 248

Query: 241 VIWEQEFLTGPDNMCHSIENLEYHTFKYAHLLHAGDVHAHFMGAANLSFAYSVRTEDGDS 300
           VIWEQEFLTGPDNMCHSIENLEYH FKY+HLLHAGDVH H+MGAANLSFAYSVRTEDGDS
Sbjct: 249 VIWEQEFLTGPDNMCHSIENLEYHYFKYSHLLHAGDVHVHYMGAANLSFAYSVRTEDGDS 308

Query: 301 IEISIPDFGAPLVNGIQHVQSNLRPGGVRQL 331
           IEISIPDFGAPLVNGI HV+S  RPGGV+ L
Sbjct: 309 IEISIPDFGAPLVNGIAHVKSAFRPGGVKPL 339


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,237,307
Number of extensions: 59502
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)