BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0150.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313162|ref|YP_003777254.1| hypothetical protein Hsero_3868...   461   e-131

>gi|300313162|ref|YP_003777254.1| hypothetical protein Hsero_3868
           [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  461 bits (1186), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/239 (92%), Positives = 234/239 (97%)

Query: 1   MKQIKLILKDDIYDSLERDYHNFVRLSTKIDSGFVKPSFDSYLLAKLSENTNFLTEEAVQ 60
           MKQIKLILKD+IYDSLERDY NFVR STKIDSGFVKPSFD+YLLAKLSEN+NFLTEEAVQ
Sbjct: 1   MKQIKLILKDEIYDSLERDYQNFVRFSTKIDSGFVKPSFDNYLLAKLSENSNFLTEEAVQ 60

Query: 61  HLMLSGQYAWARRAMDKEFPDVVQILIEQAANYGFWIAVRHDWGTEELVNASRAWAGAII 120
           HLMLSGQYAWARRAMDK+FPDVVQILIEQAANYGFWIAVRHDWGT+ELV AS+AWA AII
Sbjct: 61  HLMLSGQYAWARRAMDKDFPDVVQILIEQAANYGFWIAVRHDWGTDELVAASKAWAMAII 120

Query: 121 KQAKGDETQIDVLASQIKASATNIAVVQERLKTPASQLAHAMVQELRETHIAIEHASGVV 180
           KQAKGDE+Q+DVLA+QIKASAT+IAVVQERLKTPASQLAHAMVQELRETHIAIEHASG+V
Sbjct: 121 KQAKGDESQVDVLAAQIKASATSIAVVQERLKTPASQLAHAMVQELRETHIAIEHASGMV 180

Query: 181 AREKLGAMRTLLKLGRAYGNVSEKAEQDMMDKLKREKPWLFETGPKGFWGHVAAWWRGV 239
           AREKLGAMRTLLKLGRAYGNVSEKAEQDMM+KLKREKPWLF+ GPKGFWGHVAAWWRGV
Sbjct: 181 AREKLGAMRTLLKLGRAYGNVSEKAEQDMMEKLKREKPWLFDEGPKGFWGHVAAWWRGV 239


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 696,907
Number of extensions: 24982
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)