BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0146.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313160|ref|YP_003777252.1| threonine efflux protein [Herba...   217   6e-58

>gi|300313160|ref|YP_003777252.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score =  217 bits (552), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/189 (70%), Positives = 148/189 (78%), Gaps = 1/189 (0%)

Query: 2   MLSSEFFLLAGAHLLALASPGPDFLLLLRGSLRHGRGYGLAAALGIALANGLYIALAIGG 61
           M SSEF LLA AHLLALASPGPDFLLL+RG+LRHGRGYGLAA+ GIA ANGLYIALAI G
Sbjct: 1   MFSSEFLLLASAHLLALASPGPDFLLLVRGALRHGRGYGLAASAGIAAANGLYIALAIAG 60

Query: 62  FSLLQRAPLLLAAMQWLAACYLAWLGWVFWRAGRHPAVLPAAPVSAARVAPWAALGTGFL 121
           FSLLQ +P LL AMQWLA+ YLAWLGW+F RA   PA  P +    A  A W  +G GFL
Sbjct: 61  FSLLQHSPALLVAMQWLASLYLAWLGWMFMRASLEPAPWPGSAGRQA-AAAWRGVGAGFL 119

Query: 122 SAALNPKNGVFYFGLFTVIVSAQTGASTKLFYGVWMFGAVLAWDAGLVYFIAQQRVMRAL 181
           SA LNPKNG+FYFGLFT++V A TG   KLFYGVWMFGAVLAWDAGLV  +AQ RV   L
Sbjct: 120 SALLNPKNGLFYFGLFTLMVEAHTGLPRKLFYGVWMFGAVLAWDAGLVCLMAQPRVAALL 179

Query: 182 TRVLPLIER 190
            R LP++ER
Sbjct: 180 DRALPMVER 188


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 429,031
Number of extensions: 12524
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 3
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)