BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0137.p (505 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 736 0.0 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 77 5e-15 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 62 1e-10 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/389 (94%), Positives = 378/389 (97%) Query: 1 MRRYPNSASSSQAPVKRQRGDWEVVRTLLPYLWTYKWRVMLALAFLVGAKLANVGVPLVL 60 MRRYPNS+SS QAP++RQRGDWEVVRTLLPYLWTYKWRV+LALAFLVGAKLANVGVPLVL Sbjct: 1 MRRYPNSSSSPQAPIQRQRGDWEVVRTLLPYLWTYKWRVLLALAFLVGAKLANVGVPLVL 60 Query: 61 KRLVDAMTITPTHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIALQ 120 KRLVDAMTITPTHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIALQ Sbjct: 61 KRLVDAMTITPTHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIALQ 120 Query: 121 VFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSTLVSYTLFSILPTIIEIVLVLAYLSTH 180 VFRHLHALSLRFHLNRQTGGMTRDIERGTRGVS+LVSYTLFSILPT+IEI LVLAYL TH Sbjct: 121 VFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSLVSYTLFSILPTLIEIALVLAYLITH 180 Query: 181 YDIWFSLITAGALVLYILFTITVTEWRTHFRRTMNELDSHANTRAIDSLLNYETVKYFGN 240 YD+WFS+ITAGALV YILFTITVTEWRTHFRRTMNELDSHANTRAIDSLLNYETVKYFGN Sbjct: 181 YDVWFSVITAGALVCYILFTITVTEWRTHFRRTMNELDSHANTRAIDSLLNYETVKYFGN 240 Query: 241 EEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRAIAGVIDGSMTLG 300 EEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRA GVIDGSMTLG Sbjct: 241 EEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRATVGVIDGSMTLG 300 Query: 301 DMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEENREVADRPGAQPLKTQGA 360 DMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEE+REVAD A+PLKTQGA Sbjct: 301 DMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEEHREVADSADAKPLKTQGA 360 Query: 361 ELHFEHVDFSYERNRQILFDVDFKVQAGT 389 LHF+HVDFSYERNRQILFDVDF VQAGT Sbjct: 361 NLHFDHVDFSYERNRQILFDVDFTVQAGT 389 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 83/344 (24%), Positives = 164/344 (47%), Gaps = 23/344 (6%) Query: 36 KWRVMLALAFLVGAKLANVGV--PLVLKRLVDAMTITPTHPQALLVLPLGLLVAYGALRL 93 K+R LA L+ L +G+ P+ + ++D + + L V+ +GL+ A + Sbjct: 158 KYRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAM-MTLNVIAVGLIAAT----V 212 Query: 94 ATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVS 153 A+ T +R +FA + + + ++F HL +L L + R+ G I R R + Sbjct: 213 FEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAG---DSIAR-VRELE 268 Query: 154 TLVSYTLFSILPTIIEIVLVLAYLSTH--YDIWFSLITAGALVLYILFTITVTEWRTHFR 211 + S+ + + +++I+ +L Y + SLI ++ +Y+L ++ T R Sbjct: 269 NIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPL---LR 325 Query: 212 RTMNE-LDSHANTRA--IDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSL 268 +N+ + A ++ +++L +TVK E +++D+ L Y A + + +++SL Sbjct: 326 ERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTT-TNISL 384 Query: 269 LNTGQSAIIAIAVTL-ILWRAIAGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIK 327 L +G +++ VT+ I+W V+ M++G++V N Q+ P+ L L+ + + Sbjct: 385 LASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQ 444 Query: 328 QSLADMERLFSLLEENREVADRPGAQPLKTQGAELHFEHVDFSY 371 Q M RL +L+ EVA P + GA + F+ V F Y Sbjct: 445 QIGISMSRLADVLDARTEVAGNRTRLP-RVNGA-ISFDLVSFRY 486 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 93/388 (23%), Positives = 169/388 (43%), Gaps = 41/388 (10%) Query: 4 YPNSASSSQAPVKRQRGDWEVVRTLLPYLWTYKWRVMLALAFLVGAKLANVGVPLVLKRL 63 +P ++ +P R+ +R LLP+L YK + +LA LV A A + VP K++ Sbjct: 16 HPADDHAADSPTARKSA-LAALRGLLPFLAPYKKQFLLAGLALVVAAAATLAVPYAFKQM 74 Query: 64 VD-----AMTITPTHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIA 118 +D A + + +H + G+ G + T LR M + + +R + Sbjct: 75 IDLGFGAAGSKSASHINLYFLALFGVACILG-------VATALRFYMVSWLGERVTADLR 127 Query: 119 LQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSTLVSYTLFSILPTIIEIV--LVLAY 176 V+ H+ S F +TG + + T + TLV ++ L + + + + + Sbjct: 128 SAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLF 187 Query: 177 LSTHYDIWFSLITAGALVLYILFTITVTEWRTHFRRTMNELDSHANTRAIDS------LL 230 ++ ++ A+VL I+F + R + +L + R D+ +L Sbjct: 188 FTSARLTSIIIVMLAAVVLPIVF----------YGRRVRKLSRASQDRVADASAMAGEIL 237 Query: 231 N-YETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRAI 289 N TV+ F +EE EARR+ + ++R A++ + SLL ++ A+ +LW Sbjct: 238 NAMPTVQAFTHEEIEARRFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGA 297 Query: 290 AGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYR---EIKQSLADMERLFSLLEENREV 346 V++GSM+ G++ F++ + LG L + +++ ERL LL + V Sbjct: 298 HAVMEGSMSGGEL---GQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPV 354 Query: 347 AD--RPGAQPLKT-QGAELHFEHVDFSY 371 P P +T GA L + VDF Y Sbjct: 355 QSVLLPEKLPPRTANGAALTVQGVDFHY 382 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,240,575 Number of extensions: 42647 Number of successful extensions: 192 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 5 Length of query: 505 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 416 Effective length of database: 1,198,455 Effective search space: 498557280 Effective search space used: 498557280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)