BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0136.p (121 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 217 2e-58 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 131 2e-32 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 116 5e-28 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 114 3e-27 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 111 2e-26 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 217 bits (553), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/112 (97%), Positives = 111/112 (99%) Query: 1 MVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTT 60 MVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTT Sbjct: 491 MVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTT 550 Query: 61 LVIAHRLSTIVNAQQILVMDHGRIVERGTHAGLLMADGLYAQMWLRQQAGAE 112 LVIAHRLSTIVNAQQILV+DHGRIVERGTHAGLLMA GLYAQMWLRQQAGA+ Sbjct: 551 LVIAHRLSTIVNAQQILVLDHGRIVERGTHAGLLMAGGLYAQMWLRQQAGAD 602 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 131 bits (330), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 64/109 (58%), Positives = 83/109 (76%) Query: 2 VGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTL 61 VGERG+KLSGG++QR+AIAR +LKD IL+ DEATSALDS E AIQ L ++ +T + Sbjct: 497 VGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVV 556 Query: 62 VIAHRLSTIVNAQQILVMDHGRIVERGTHAGLLMADGLYAQMWLRQQAG 110 IAHRLSTI +++V+D GRIVE+G+HA LL A+GLYA++W Q G Sbjct: 557 AIAHRLSTIAAMDRLIVLDQGRIVEQGSHAELLAANGLYARLWSHQSGG 605 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 116 bits (291), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 60/111 (54%), Positives = 81/111 (72%), Gaps = 3/111 (2%) Query: 2 VGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTL 61 +G+ G +LSGG++QRVAIAR + KD ILI DEATSALD+ +E+A+Q L+ + + RTT Sbjct: 466 LGDNGSRLSGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALDRLMQGRTTF 525 Query: 62 VIAHRLSTIVNAQQILVMDHGRIVERGTHAGLLMADGLYAQMW---LRQQA 109 VIAHRLSTI A +I+V+ HG+I E GTH LL +G+YA ++ QQA Sbjct: 526 VIAHRLSTIERADRIVVLAHGQIAEIGTHQALLEQEGVYANLYRLQFSQQA 576 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 114 bits (284), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 59/111 (53%), Positives = 81/111 (72%), Gaps = 2/111 (1%) Query: 1 MVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTT 60 MVGE+G LSGG++QR+AIAR L+ +P ILIFDEATSALD +E+ IQ + +I RT Sbjct: 607 MVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTV 666 Query: 61 LVIAHRLSTIVNAQQILVMDHGRIVERGTHAGLL-MADGLYAQMWLRQQAG 110 L+IAHRLS + +A +I+VM+ GR+ E G+H L+ + G+YA + R QAG Sbjct: 667 LIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLH-RLQAG 716 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 111 bits (278), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 55/112 (49%), Positives = 80/112 (71%) Query: 1 MVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTT 60 +VGERG LSGGE+QR++IAR LL DP ILI DEATS++D+ E+ IQ+ L+ + + RTT Sbjct: 633 LVGERGQALSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTT 692 Query: 61 LVIAHRLSTIVNAQQILVMDHGRIVERGTHAGLLMADGLYAQMWLRQQAGAE 112 + IAHRLST+ A +++V+D G++VE G H L+ +G Y +++ Q E Sbjct: 693 IAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMAREGHYYKLYQAQARNPE 744 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 330,163 Number of extensions: 9443 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 45 Length of query: 121 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 47 Effective length of database: 1,269,480 Effective search space: 59665560 Effective search space used: 59665560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)