BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0128.p (242 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo... 495 e-141 gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transpo... 368 e-103 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 270 1e-73 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 267 7e-73 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 243 1e-65 >gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 495 bits (1274), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/242 (99%), Positives = 241/242 (99%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV Sbjct: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 Query: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY Sbjct: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 Query: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV Sbjct: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGLVVEDCAKDEFFASPRSERARDFLAKII 240 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKG+VVEDCAKDEFFA PRSERARDFLAKII Sbjct: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFAQPRSERARDFLAKII 240 Query: 241 TH 242 TH Sbjct: 241 TH 242 >gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 368 bits (944), Expect = e-103, Method: Compositional matrix adjust. Identities = 173/244 (70%), Positives = 209/244 (85%), Gaps = 2/244 (0%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 MI L +VSK+YG F+VL+ C+ + KG+VVVVCGPSGSGKSTLIKT+N LEP Q+G+IT+ Sbjct: 1 MITLQDVSKYYGDFKVLSACNAVIAKGEVVVVCGPSGSGKSTLIKTINALEPIQEGSITI 60 Query: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 DGV V D TNL +LR+R+GMVFQ+FELFPHL+I +NLT+ QIKVLGR K+EA + G+KY Sbjct: 61 DGVKVNDRSTNLPRLRSRVGMVFQHFELFPHLTIIQNLTLAQIKVLGRKKDEAHQHGMKY 120 Query: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 L+RVGL AH K+PGQLSGGQQQRVAIARAL+MDPI MLFDEPTSALDPEM+NEVLDVMV Sbjct: 121 LERVGLKAHAGKYPGQLSGGQQQRVAIARALAMDPICMLFDEPTSALDPEMVNEVLDVMV 180 Query: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGLVVEDCAKDEFFA--SPRSERARDFLAK 238 LAQEGMTM+ VTHEMGFAR VA+RV+FMD+G +VED +KD+FFA S R+R FL+K Sbjct: 181 ELAQEGMTMVCVTHEMGFARMVAHRVIFMDQGSIVEDRSKDDFFAGGGDHSARSRQFLSK 240 Query: 239 IITH 242 I++H Sbjct: 241 ILSH 244 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 270 bits (689), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 129/240 (53%), Positives = 174/240 (72%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 MIE+ +SK +G +VL D S SV +G+VV + GPSGSGKST+++ +NGLE +++G I + Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 DG V ++ +LR R+GMVFQ F LFPH ++ EN+T G I V G ++ +A + + Sbjct: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAMSL 120 Query: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 LD+VGL A D +P QLSGGQQQRVAIAR+L+M P A+LFDEPTSALDPE++ EVL VM Sbjct: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 Query: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGLVVEDCAKDEFFASPRSERARDFLAKII 240 LA +GMTM+VVTHEMGFAR+VA+RV F+ G +VE A + A P+ R +DFL ++I Sbjct: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 267 bits (682), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 128/240 (53%), Positives = 171/240 (71%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 MI++N + K +G +L ++ +VV V GPSGSGKST ++ +NGLE G I + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 +GV + DPK NL+ LRA +GMVFQ F LFPH+++ ENL + ++V S+ EA K Sbjct: 61 EGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVLVAEKL 120 Query: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 L +VGLL D FP QLSGGQQQRVAIARAL+M+P MLFDEPTSALDPE++ EVL VM Sbjct: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK 180 Query: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGLVVEDCAKDEFFASPRSERARDFLAKII 240 LA+EGMTM+VVTHEMGFAR+V++RV+F+D+G+++E+ + P ER RDFL K++ Sbjct: 181 QLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDFLRKVL 240 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 243 bits (619), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/236 (51%), Positives = 165/236 (69%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 ++E+NN++K +GS QVL S SV++G VV + G SGSGKST+++ +NGLE G+ITV Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 G + +L +LR +GMVFQ++ LFPHL++ EN+ + V + E A E +K Sbjct: 63 AGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIKV 122 Query: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 L +VGL +D +P QLSGGQQQRVAIAR+L+M+P MLFDE TSALDPE+ EVL VM Sbjct: 123 LKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVME 182 Query: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGLVVEDCAKDEFFASPRSERARDFL 236 LA+ GMTM++VTHEM FAR+VA+ VFM +G V E +EFFA P++ AR F+ Sbjct: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFI 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 694,011 Number of extensions: 26862 Number of successful extensions: 539 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 290 Number of HSP's successfully gapped: 148 Length of query: 242 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,226,865 Effective search space: 195071535 Effective search space used: 195071535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)