BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0121.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313141|ref|YP_003777233.1| hypothetical protein Hsero_3847...   404   e-114

>gi|300313141|ref|YP_003777233.1| hypothetical protein Hsero_3847
           [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score =  404 bits (1039), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/236 (89%), Positives = 219/236 (92%), Gaps = 2/236 (0%)

Query: 1   MTISAPKMTIKRHLPLPLLILLWTAVVAVGAAAAVWTYQLGRNNLPGLH--GDAGEQIEQ 58
           MTISAPKMTIKRHLP PL+ LLW  VVAVGAAAAVWTYQLGRN+LPGL   GDA EQ+EQ
Sbjct: 1   MTISAPKMTIKRHLPWPLMALLWAVVVAVGAAAAVWTYQLGRNHLPGLQLQGDASEQVEQ 60

Query: 59  LSEQVKKLTAENERLQSASNASQNELKIAQTAQATLATQVKNMEAEINRQKEDLAFFDSL 118
           LSEQVKKL+AENERLQSASNASQNELKIAQ+AQA LATQVKN+EAEINRQKEDLAFFDSL
Sbjct: 61  LSEQVKKLSAENERLQSASNASQNELKIAQSAQAQLATQVKNLEAEINRQKEDLAFFDSL 120

Query: 119 LPTNLGAPGITIQRFKAEQAAPNQLRYRVLVMQGGGGTQQFAGNLQLSVNMVQGGKGVTI 178
           LPTNLGAPGITIQRFKAEQAAPNQLRYRVLVMQGGGGTQQFAGNLQLSVN+VQGGK   I
Sbjct: 121 LPTNLGAPGITIQRFKAEQAAPNQLRYRVLVMQGGGGTQQFAGNLQLSVNIVQGGKSAII 180

Query: 179 NFPEGNSGDQARYRLAFKYYQRVEGLLTIPEGAIVKSVAVRVLDRGQVRAQQSVDL 234
           NFPE NS D ARYRLAFKYYQRVEGLL IPEGA +KSVAVRVLDRGQVRAQQSVDL
Sbjct: 181 NFPESNSTDLARYRLAFKYYQRVEGLLNIPEGASIKSVAVRVLDRGQVRAQQSVDL 236


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 583,215
Number of extensions: 22029
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)