BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0113.p (681 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313134|ref|YP_003777226.1| twitching motility transmembran... 1099 0.0 gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis tra... 122 1e-28 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 116 6e-27 gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sen... 115 1e-26 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 106 5e-24 >gi|300313134|ref|YP_003777226.1| twitching motility transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 753 Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 580/681 (85%), Positives = 635/681 (93%) Query: 1 VLLGVLALSLAALCLFMWLGARLYLLATLQTNLASDLVMHSQRIGKAVPNAIQGNPQAFV 60 +LLG+LALSLA L LF+WLG+RLY+ ATLQT++ASDLVMHSQR+GKAVPNAIQGNP+AFV Sbjct: 73 ILLGILALSLAGLFLFLWLGSRLYIHATLQTHIASDLVMHSQRLGKAVPNAIQGNPEAFV 132 Query: 61 QLAQSRLEFNRGLLLLSSGGPYQGQNIGLPDPALKPALDNVARMWRRTDLAAETILGMEK 120 QLAQSR+EFNRGLLLL+SGG YQG IGLP+PA+KPAL+++ R+WRR+DLAAE IL ++K Sbjct: 133 QLAQSRVEFNRGLLLLTSGGTYQGNTIGLPEPAMKPALESITRLWRRSDLAAENILALQK 192 Query: 121 ELTGFGTTLKRLNQLLPVMLDLSEQIAMLQSQGRPTTREMAAASQLVMLTLRLGRSSNEF 180 ELTGFG TLKRLNQLLPVMLDLSEQI+MLQSQ RPT REM AASQLVMLTLRLGRS+NEF Sbjct: 193 ELTGFGATLKRLNQLLPVMLDLSEQISMLQSQSRPTPREMNAASQLVMLTLRLGRSANEF 252 Query: 181 LTSDGVNAETAFMLGKDITAFGDLLKSLLEGNEMLRLRAATDADLRSKLQELTRVFGEYQ 240 LTS+GVN ETAFMLGKDITAFGD L SL +GNEMLRLR A+D DLR KL EL RVF +YQ Sbjct: 253 LTSEGVNPETAFMLGKDITAFGDQLTSLRDGNEMLRLRPASDPDLREKLDELERVFAQYQ 312 Query: 241 PQIAGILGNLQNFIAAKRSEQLVFMENETLKRHLTELQEAYRVALKARSWTFWAVLCAMA 300 PQIAGILG+LQNFIAAK++E+LVF+ENETLKR LTELQ+ YR+ALK+RSWTFWA+L M Sbjct: 313 PQIAGILGHLQNFIAAKQAERLVFVENETLKRQLTELQDDYRIALKSRSWTFWAMLVTMV 372 Query: 301 MALLSAIGIALVQLQSSRNNAAAAEARRQEAELQRQLAQQEEEKAMRANHLTQAAVLRLM 360 MALLSAIGIALVQLQSSRNNAAAAEARRQ+AELQRQLAQQEEEKAMR NHLTQ A+LRLM Sbjct: 373 MALLSAIGIALVQLQSSRNNAAAAEARRQQAELQRQLAQQEEEKAMRVNHLTQTAILRLM 432 Query: 361 TELQRVADGDLTVHTTVSDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVAWSSEHVRGT 420 TELQ+VADGDLTV TTVSDDVTGAIADSVN+TVEALR LVEQVTQMA+KV+ SSE VRGT Sbjct: 433 TELQKVADGDLTVRTTVSDDVTGAIADSVNHTVEALRALVEQVTQMASKVSQSSEQVRGT 492 Query: 421 TTELGAAARAQARRIQRIAQAMLEMSNQITGISVSADESADVARHAVVVAERGARAVEDA 480 TTELGAAARAQARRIQRIAQAMLEMS QITGISVSADESADVARHAV+ AERG RAVE+A Sbjct: 493 TTELGAAARAQARRIQRIAQAMLEMSMQITGISVSADESADVARHAVLAAERGERAVENA 552 Query: 481 VKAMDGIGEQIRETSERIKRLGASSQMIGEITDLISDITERTNVLALNAAIQAASAGEAG 540 +KAM+GI EQI+ETS RI RLG SSQMIGEIT+LISDITERTNVLALNAAIQAASAGEAG Sbjct: 553 IKAMNGIREQIQETSGRITRLGESSQMIGEITELISDITERTNVLALNAAIQAASAGEAG 612 Query: 541 RGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTNGVTDGAVLSDAAG 600 RGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAM+KST GVT+GAVLSDAAG Sbjct: 613 RGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMDKSTTGVTEGAVLSDAAG 672 Query: 601 SALADIRSVSKRLADLIQGMAVSTREQAVSANGVAQQIQGILSENDIIEQSREQVATLYE 660 SALADIRSVS++LA+LIQGMA STREQAVSANGVAQQIQGIL+ENDIIEQSREQV+ LYE Sbjct: 673 SALADIRSVSEKLAELIQGMAGSTREQAVSANGVAQQIQGILTENDIIEQSREQVSALYE 732 Query: 661 ELWDAARQLESSVSRFRVKVS 681 ELW AARQLE+SVSRFRV VS Sbjct: 733 ELWAAARQLENSVSRFRVTVS 753 >gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/302 (31%), Positives = 158/302 (52%), Gaps = 35/302 (11%) Query: 369 GDLTVHTTVSDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVAWSSEHVRGTTTELGAAA 428 GDL+ H +S G++ +++ +LR +V+ V + +A S + +L A Sbjct: 239 GDLSTHIDISHAAQGSVVSAMHMMQGSLRKVVQTVRTSSESIATGSRQIATGNLDLSART 298 Query: 429 RAQARRIQRIAQAMLEMSNQITGISVSADESADVARHAVVVAERGARAVEDAVKAMDGIG 488 QA ++ A +M E+++ + + +A + ++A A VA+ G V V M I Sbjct: 299 EQQASALEETASSMEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAIN 358 Query: 489 EQIRETSERIKRLGASSQMIGEITDLISDITERTNVLALNAAIQAASAGEAGRGFSVVAE 548 E SS+ + +I +I I +TN+LALNAA++AA AGE GRGF+VVA Sbjct: 359 E--------------SSRKMADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAT 404 Query: 549 EVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTNGVTDGAVLSDAAGSALADIRS 608 EV++LA+RS+AA +EI AL+ E S + VT GA L+D AG+ ++ I Sbjct: 405 EVRNLAQRSAAAAKEIKALI--------------EDSVDKVTVGARLADQAGTTMSGIVE 450 Query: 609 VSKRLADLIQGMAVSTREQAVSANGVAQQIQGILSENDIIEQSREQVATLYEELWDAARQ 668 + ++ +I ++ ++ EQ G+ Q Q I+ +D+ +Q+ A+L EE A+R Sbjct: 451 NAGKVTSIIGEISAASTEQTA---GIEQINQAIMQMDDVTQQN----ASLVEEAAAASRA 503 Query: 669 LE 670 L+ Sbjct: 504 LQ 505 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 145/272 (53%), Gaps = 29/272 (10%) Query: 364 QRVADGDLTVHT-TVSDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVAWSSEHVRGTTT 422 QRVA GDLT+ D TGA+ +++ E+LR +V +V Q + +S + Sbjct: 227 QRVARGDLTLRIRPAGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNL 286 Query: 423 ELGAAARAQARRIQRIAQAMLEMSNQITGISVSADESADVARHAVVVAERGARAVEDAVK 482 +L QA ++ A AM E+++ +T + +A ++ +A A +A +G V V+ Sbjct: 287 DLSNRTEQQAGSLEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQ 346 Query: 483 AMDGIGEQIRETSERIKRLGASSQMIGEITDLISDITERTNVLALNAAIQAASAGEAGRG 542 M+GI E SS+ I +I +I I +TN+LALNAA++AA AGE GRG Sbjct: 347 TMEGITE--------------SSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRG 392 Query: 543 FSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTNGVTDGAVLSDAAGSA 602 F+VVA EV+ LA+RS+ A +EI L+ + S V+ G+ L + AGS Sbjct: 393 FAVVASEVRSLAQRSAGAAKEIKELI--------------DDSVQKVSAGSALVERAGST 438 Query: 603 LADIRSVSKRLADLIQGMAVSTREQAVSANGV 634 + ++ + +R+ D++ ++ +T+EQ+ N V Sbjct: 439 MTEVVASVRRVTDVVAEISAATQEQSGGINEV 470 >gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 539 Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 106/320 (33%), Positives = 169/320 (52%), Gaps = 35/320 (10%) Query: 364 QRVADGDLTVHTTV-SDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVAWSSEHVRGTTT 422 ++VAD DLT V S D TG + ++N+ ++L +V +V + + + +S + Sbjct: 245 RQVADNDLTGQVRVHSADETGQLMQALNHMTQSLGNMVAEVHRSISVIDTASGEIASGNA 304 Query: 423 ELGAAARAQARRIQRIAQAMLEMSNQITGISVSADESADVARHAVVVAERGARAVEDAVK 482 +L A +QA ++ A AM E+++ + + A ++ ++ + +A +G V+ V+ Sbjct: 305 DLSARTESQASSLEETASAMEELTSTVRQNADHAHQANELVATSSRLAVQGGAVVDQVVQ 364 Query: 483 AMDGIGEQIRETSERIKRLGASSQMIGEITDLISDITERTNVLALNAAIQAASAGEAGRG 542 M GE IR S RI +IT +I I +TN+LALNAA++AA AGE GRG Sbjct: 365 TM---GE-IRTGSARI----------ADITGVIDGIAFQTNILALNAAVEAARAGEQGRG 410 Query: 543 FSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTNGVTDGAVLSDAAGSA 602 F+VVA EV+ LA+RS+AA REI AL+ E S V GA L D AG Sbjct: 411 FAVVATEVRSLAQRSAAAAREIKALI--------------EGSVQQVATGAELVDQAGQT 456 Query: 603 LADIRSVSKRLADLIQGMAVSTREQAVSANGVAQQIQGILSENDIIEQS---REQVATLY 659 + +I R+A L+ +AV++REQ + G+ + + ++ +Q+ EQ A Sbjct: 457 MHEIVDSVARVATLMSEIAVASREQ---SRGIDEINHAVTQMDEGTQQNAALVEQAAAAA 513 Query: 660 EELWDAARQLESSVSRFRVK 679 L D RQL + V+RFR++ Sbjct: 514 HSLRDQTRQLAALVARFRLR 533 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 84/263 (31%), Positives = 136/263 (51%), Gaps = 29/263 (11%) Query: 366 VADGDLTVHTTV-SDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVAWSSEHVRGTTTEL 424 VA+GDL+ V S D TG + S+ ++LRG+V V ++ +S + +L Sbjct: 229 VAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDL 288 Query: 425 GAAARAQARRIQRIAQAMLEMSNQITGISVSADESADVARHAVVVAERGARAVEDAVKAM 484 + QA + A AM E+ + + + +A +++ +A A VAE+G V V M Sbjct: 289 SSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTM 348 Query: 485 DGIGEQIRETSERIKRLGASSQMIGEITDLISDITERTNVLALNAAIQAASAGEAGRGFS 544 I ASS+ I +I +I I +TN+LALNAA++AA AGE GRGF+ Sbjct: 349 GAIN--------------ASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 394 Query: 545 VVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTNGVTDGAVLSDAAGSALA 604 VVA EV+ LA+RS++A +EI L+ S V DG+ L + AG+ + Sbjct: 395 VVASEVRTLAQRSASAAKEIKELI--------------NDSVGKVDDGSRLVEQAGNTMQ 440 Query: 605 DIRSVSKRLADLIQGMAVSTREQ 627 ++ S +R+ D++ ++ ++ EQ Sbjct: 441 EVVSSVRRVTDIVAEISAASTEQ 463 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.128 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,571,496 Number of extensions: 56457 Number of successful extensions: 459 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 357 Number of HSP's successfully gapped: 69 Length of query: 681 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 589 Effective length of database: 1,184,250 Effective search space: 697523250 Effective search space used: 697523250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)