BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0112.p
         (464 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313133|ref|YP_003777225.1| CheA-like histidine kinase [Her...   189   5e-49

>gi|300313133|ref|YP_003777225.1| CheA-like histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 744

 Score =  189 bits (479), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 146/344 (42%), Positives = 195/344 (56%), Gaps = 57/344 (16%)

Query: 24  DERLRETLRPLLAIVRQQSAAWCARLDQQQARPGLPALALRTLAALRDYAGASGATAFAS 83
           ++ L+ETL+PLL I+RQQ ++W AR+D     P  P L LRTL A+RD   ++GA    +
Sbjct: 20  NDALQETLQPLLKILRQQGSSWRARVDSGLVCPA-PPLYLRTLTAVRDCTRSAGAADLEA 78

Query: 84  SASALLETLQQ-----QGSD----GISHAGTRSLLEAGIHSLASQLEGPLA--------P 126
            ASA+L  L+      QG D     I      +L + G + +A +    L+        P
Sbjct: 79  CASAILRVLECAQPPGQGLDIPALDIIERAVAALAQRGSNRVALEELAALSQPPRMRSSP 138

Query: 127 ASEPQAP---------------ELIDPLLLPVFLEEAQELIAGIGETLLVLSEGGQPGAV 171
           A+   AP               + +D  LLPVFLEEAQEL++ IGE L    E  + G  
Sbjct: 139 AARDTAPAPWLAPREQQWEGLQDELDQALLPVFLEEAQELMSSIGEGL----EALRQGVA 194

Query: 172 DASLLAELARPLHTLKGSARMVGALHLSRCLHDMEGALQRLGEG--------SPAPRSVA 223
           DA L A LARPLHTLKGSARMVGA  LS CLH ME AL+ +  G        S    ++ 
Sbjct: 195 DAEL-AGLARPLHTLKGSARMVGARRLSHCLHQMETALRGVQTGIEGVHDRSSATLAALE 253

Query: 224 ALLALYDQSVEHFSTLEQGMATLSATGTQAAPSALPGTAAAEGRLTAPLVRIRTAVLDKL 283
            LL L+D +++HF+ L Q    LSA G   AP            L APL+RIRT VLDKL
Sbjct: 254 TLLGLHDLALDHFAALTQAALLLSADGGARAPV-----------LPAPLIRIRTTVLDKL 302

Query: 284 LNQVGEVSISRAQLDNEIGALQGDARLLGEDLDAMAQQLQRWQR 327
           LNQVGEVSI+R++LDNE+G+LQ +++ LGE L  ++ +L++W R
Sbjct: 303 LNQVGEVSIARSRLDNEVGSLQSESKALGEQLMRLSGELRQWLR 346


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,183,643
Number of extensions: 44406
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 375
Effective length of database: 1,198,455
Effective search space: 449420625
Effective search space used: 449420625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)