BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0106.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313130|ref|YP_003777222.1| thiosulfate sulfurtransferase [...   528   e-151

>gi|300313130|ref|YP_003777222.1| thiosulfate sulfurtransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score =  528 bits (1359), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 247/285 (86%), Positives = 272/285 (95%)

Query: 1   MTYQTLISASELKSRAQYLNIVVVDCRHDLTNPAYGREAYAAGHLPQARFAHLDELLSGP 60
           M YQTLISASELK+RA ++N+V+VDCRHDL NP +GR+AYAAGHLPQARFAHLDELLSGP
Sbjct: 1   MIYQTLISASELKARAAHINLVIVDCRHDLANPDFGRQAYAAGHLPQARFAHLDELLSGP 60

Query: 61  KTDAAGRFHGRHPLPDRQQFVQAMRDLGINNDTQVVAYDAHGGMYAARLWWLLRWIGHSD 120
           KTDAAGRFHGRHPLPDRQQFVQAMR LGINNDTQVVAYDAHGGM+AARLWWLLRWIGHSD
Sbjct: 61  KTDAAGRFHGRHPLPDRQQFVQAMRALGINNDTQVVAYDAHGGMFAARLWWLLRWIGHSD 120

Query: 121 VAVLDGGMAAWQALGETLTSETPAPAAPGNIQDLSSLVKTVDAQALLDNLKSQTLQVVDA 180
           VAVLDGGMAAWQA+GE L++ETPAPA PG+IQDL+SLV+TVDAQAL++N+K+Q LQV+DA
Sbjct: 121 VAVLDGGMAAWQAIGEPLSAETPAPATPGSIQDLTSLVQTVDAQALVENIKTQALQVIDA 180

Query: 181 RAPDRFRGENETIDAVGGHIPGAKNRFFKDNLQADGHFKSATQLREEWLSVVGDPQAAVM 240
           RAPDRFRGENET+DAVGGHIPGAKNRFFKDNLQADG FK A QLREEWL+++GDPQAAVM
Sbjct: 181 RAPDRFRGENETLDAVGGHIPGAKNRFFKDNLQADGRFKGAAQLREEWLTLLGDPQAAVM 240

Query: 241 QCGSGVTACHNLLALEVAGLPGAHLYPGSWSEWSSDPQRPVATGN 285
           QCGSGVTACHNLLALEVAGL GA LYPGSWSEWSS+PQRPVATG+
Sbjct: 241 QCGSGVTACHNLLALEVAGLAGARLYPGSWSEWSSNPQRPVATGS 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,048,933
Number of extensions: 46314
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)