BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0104.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313128|ref|YP_003777220.1| dioxygenase subunit alpha oxido...   664   0.0  
gi|300310673|ref|YP_003774765.1| phenylpropionate dioxygenase la...    60   3e-10

>gi|300313128|ref|YP_003777220.1| dioxygenase subunit alpha
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/325 (96%), Positives = 323/325 (99%)

Query: 1   MVPEAGDYSTLPWENEGRMLVRNAQGVELLSNVCRHRQAKMLDGRGHATNIVCPLHRWTY 60
           MVPEAGDYSTLPWENEGRMLVRNAQG+EL+SNVCRHRQAKMLDGRGHA+NIVCPLHRWTY
Sbjct: 48  MVPEAGDYSTLPWENEGRMLVRNAQGIELVSNVCRHRQAKMLDGRGHASNIVCPLHRWTY 107

Query: 61  DLKGELIGAPHFGETPCMNLSKTPLQSWNGLLFENNGVNIADKLKHLGVTRDLDFSGYLY 120
           DLKGELIGAPHFG+TPCMNLSKTPLQSWNGLLFE NGV+IADKLK+LGVTRDLDFSGYLY
Sbjct: 108 DLKGELIGAPHFGQTPCMNLSKTPLQSWNGLLFEANGVDIADKLKNLGVTRDLDFSGYLY 167

Query: 121 DHTEVHECDYNWKTFIEVYLEDYHVEPFHPGLGNFVSCSDLKWEFGRDYSVQTVGVNHGL 180
           DHTEVHECDYNWKTFIEVYLEDYHVEPFHPGLGNFVSCSDLKWEFGRDYSVQTVGVNHGL
Sbjct: 168 DHTEVHECDYNWKTFIEVYLEDYHVEPFHPGLGNFVSCSDLKWEFGRDYSVQTVGVNHGL 227

Query: 181 IKSGSPTYAKWQEKLLQFSNGKPPKYGAIWLTLYPNIMVEWYPHVLVVSTLWPTGPQKTT 240
           IKSGSPTYAKWQEKLLQFSNGKPPK+GAIWLTLYPNIMVEWYPHVLVVSTLWPTGPQKTT
Sbjct: 228 IKSGSPTYAKWQEKLLQFSNGKPPKFGAIWLTLYPNIMVEWYPHVLVVSTLWPTGPQKTT 287

Query: 241 NVVEFYYPEEIALFERELVEAERAAYMETCVEDDEIALRMDAGRRILMNRGTSEVGPYQS 300
           NVVEFYYPEEIALFERELVEAERAAYMETCVEDDEIALRMDAGRRILM+RGTSEVGPYQS
Sbjct: 288 NVVEFYYPEEIALFERELVEAERAAYMETCVEDDEIALRMDAGRRILMDRGTSEVGPYQS 347

Query: 301 PMEDGMQHFHEWYRQQLDVPQGTST 325
           PMEDGMQHFHEWYR+QL+VP GT+T
Sbjct: 348 PMEDGMQHFHEWYRKQLEVPPGTAT 372


>gi|300310673|ref|YP_003774765.1| phenylpropionate dioxygenase large
           terminal subunit [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 19/175 (10%)

Query: 2   VPEAGDYSTLPWENEGRMLVRNAQG-VELLSNVCRHRQAKMLDG-RGHATNIVCPLHRWT 59
           +   GD+ T     +  ++VR+  G + +L N CRHR A + +  +G+AT   CP H W+
Sbjct: 57  IKNPGDFKTAQIGRQPVIVVRDKTGKINVLENRCRHRGATVCEKHKGNATGFTCPYHSWS 116

Query: 60  YDLKGELIGAPH-FGETPCMNLSKTPLQ-----SWNGLLFENNGVNI---ADKLKHLGVT 110
           Y L G+L G P+  G    +  +  PLQ     S++G++F +    I   +D L H    
Sbjct: 117 YGLDGKLRGLPYPEGYEDVIEKADLPLQSLRCESYHGMIFASFNQEIEPLSDFLGHAKKW 176

Query: 111 RDL---DFSGYLYDHTEVHECDY--NWKTFIEVYLEDYHVEPFHPGLGNFVSCSD 160
            DL     +G+       H+  +  NWK  +E   + YH    H     F+S  D
Sbjct: 177 IDLFMKQGAGFPIKVQGEHKFSFKGNWKIQLENTTDGYHFPVVHK---TFLSSVD 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,144,946
Number of extensions: 49251
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)