BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0102.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313126|ref|YP_003777218.1| geranyltranstransferase [Herbas...   514   e-147
gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase ...   107   2e-24

>gi|300313126|ref|YP_003777218.1| geranyltranstransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  514 bits (1324), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/300 (89%), Positives = 286/300 (95%)

Query: 12  FADWMRQVQGGMEDVLDRFLPATSVVPARLHEAMRYTAMDGGKRVRPLLVYAAGDIFDTP 71
           FA WM QVQ GME+VL+RFLP+ SVVPARLHEAMRYTAMDGGKRVRPLLVYAAG++FDTP
Sbjct: 12  FAQWMGQVQSGMEEVLNRFLPSASVVPARLHEAMRYTAMDGGKRVRPLLVYAAGELFDTP 71

Query: 72  RALLDRAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHVQYDEATALLVGDALQAQAF 131
           RALL+RAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVH++YDEATALLVGDALQAQAF
Sbjct: 72  RALLERAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHIRYDEATALLVGDALQAQAF 131

Query: 132 DTLSAPLEAELVKSDAGVTARQLRMVNLLAQAAGSVGMCGGQAIDLASVGMTLSLAELEQ 191
           DTL+APLE+E   +DAG+ ARQLRMV LLA+AAGSVGMCGGQAIDLASVGMTLSLAELEQ
Sbjct: 132 DTLAAPLESEAGSADAGLPARQLRMVKLLAEAAGSVGMCGGQAIDLASVGMTLSLAELEQ 191

Query: 192 MHRLKTGALLRAAVLLGALGGKALSADESAALDEYARAIGLAFQVVDDILDATADSATLG 251
           MHRLKTGALLRAAVLLGALGGKAL+A ESAALD+YARAIGLAFQVVDDILDATADSATLG
Sbjct: 192 MHRLKTGALLRAAVLLGALGGKALTAAESAALDDYARAIGLAFQVVDDILDATADSATLG 251

Query: 252 KTAGKDAADNKPTYVSILGLAESQALAEKLRGNAHAALAPFGEKARRLRELADLIVQRKT 311
           KTAGKDAADNKPTYVSILGLAESQALA +L+ +AH ALAPFG KARRLRELADLIVQRKT
Sbjct: 252 KTAGKDAADNKPTYVSILGLAESQALAGRLQADAHEALAPFGGKARRLRELADLIVQRKT 311


>gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 116/235 (49%), Gaps = 29/235 (12%)

Query: 35  SVVPARLHEAMRYTAMDGGKRVRPLLVYAAGDIFDTPRALLDRAAAAVEMIHVYSLVHDD 94
           S VP  +++   Y    GGKR+RP+LV    + F          AA +E IH  +L+HDD
Sbjct: 14  SEVPL-VNQVAEYIISAGGKRLRPVLVVLIANAFGYKGEHHHSLAAVIEFIHTATLLHDD 72

Query: 95  MPCMDDDALRRGKPTVHVQYDEATALLVGDALQAQAFDTLSA---PLEAELVKSDAGVTA 151
           +  +D+ +LRRGK T +  +  A ++LVGD L ++AF  + A   P   E+V     V A
Sbjct: 73  V--VDESSLRRGKQTANAMFGNAASVLVGDFLYSRAFQMMVAVGNPRVMEIVADATNVIA 130

Query: 152 RQ--LRMVNLLAQAAGSVGMCGGQAIDLASVGMTLSLAELEQMHRLKTGALLRAAVLLGA 209
               L+++N+        G                      Q+ R KT  L  AA  +GA
Sbjct: 131 EGEVLQLLNMHNPDVDENGYL--------------------QVIRSKTAKLFEAASQIGA 170

Query: 210 LGGKALSADESAALDEYARAIGLAFQVVDDILDATADSATLGKTAGKDAADNKPT 264
           L   A  A   AA  EY R+IG AFQ++DD+LD + +SA +GK  G D  + KPT
Sbjct: 171 LIAGADEAGIEAAA-EYGRSIGTAFQLIDDVLDYSGNSAEIGKNVGDDLREGKPT 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 933,945
Number of extensions: 38609
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)