BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0092.p
         (357 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313120|ref|YP_003777212.1| glycolate oxidase iron-sulfur s...   674   0.0  
gi|300313123|ref|YP_003777215.1| D-lactate dehydrogenase [Herbas...    72   7e-14

>gi|300313120|ref|YP_003777212.1| glycolate oxidase iron-sulfur
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/356 (93%), Positives = 345/356 (96%)

Query: 2   QAQQDMDAVLASFRERILSGRALQIRGGGTKDWYGQDPCGDLLDTRPYSGIIDYEPTELV 61
           QAQQD+DAVLASFRERIL+GR LQIRGGGTKDWYGQ P G+LLDTR YSGIIDYEPTELV
Sbjct: 4   QAQQDLDAVLASFRERILAGRPLQIRGGGTKDWYGQTPSGELLDTRAYSGIIDYEPTELV 63

Query: 62  ITARCGTSLAEIDAALAQHNQMLAWEPPRFGGAATVGGMVAAGLSGPSRASAGAVRDFVL 121
           ITARCGT L+EIDAALAQHNQMLAWEPP FGGAATVGGMVAAGLSGP+RASAGAVRDFVL
Sbjct: 64  ITARCGTPLSEIDAALAQHNQMLAWEPPSFGGAATVGGMVAAGLSGPARASAGAVRDFVL 123

Query: 122 GAVLMDAQGEQLHFGGQVMKNVAGYDISRLLAGSLGTLGLILQVSLKVLPRPIASSTRVF 181
           GAVLMDAQGE LHFGGQVMKNVAGYDISRLLAGSLGTLGLIL+VSLKVLPRPIASSTRVF
Sbjct: 124 GAVLMDAQGEPLHFGGQVMKNVAGYDISRLLAGSLGTLGLILEVSLKVLPRPIASSTRVF 183

Query: 182 EINQEGALRLLNQSAGQPLPLVASAWVNNVLTIRLSGAQAAVDSAIKKMGGTELSNPEDY 241
           EINQEGALRLLNQSAGQPLPLVASAWV NVLTIRLSGAQAAVDSAI K+GGTELSNP+DY
Sbjct: 184 EINQEGALRLLNQSAGQPLPLVASAWVGNVLTIRLSGAQAAVDSAIAKLGGTELSNPDDY 243

Query: 242 WTDLREQTHPFFADSQAPLWRLSLPSVAPPVDLPGRQLIEWGGAQRWLRPEGNVDAVAIR 301
           WTDLREQTHPFFAD++APLWRLSLPSVA P+DLPGRQLIEWGGAQRWLRPEGNVDAV IR
Sbjct: 244 WTDLREQTHPFFADAEAPLWRLSLPSVAAPIDLPGRQLIEWGGAQRWLRPEGNVDAVTIR 303

Query: 302 AAALAVGGHASLHRGGDKAIGVFHPLQPAVETIHRRLKQQFDPQGIFNPGRLYASL 357
           AAALAVGGHASLHRGGDKAIGVFHPLQPAVET+HRRLKQQFDPQGIFNPGRLYASL
Sbjct: 304 AAALAVGGHASLHRGGDKAIGVFHPLQPAVETLHRRLKQQFDPQGIFNPGRLYASL 359


>gi|300313123|ref|YP_003777215.1| D-lactate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 471

 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 150/404 (37%), Gaps = 93/404 (23%)

Query: 19  LSGRALQIRGGGTKDWYGQDPCGDLLDTRPYSGIIDYEPTELVITARCGTSLAEIDAALA 78
           L G  L ++GG T            +D    + ++     +L  T + G +  +++  + 
Sbjct: 87  LEGHVLALQGGVT------------VDLSQMNQVLAVHAEDLTATVQAGVTRKQLNQEIK 134

Query: 79  QHNQMLAWEPPRFGGAATVGGMVAAGLSGPSRASAGAVRDFVLGAVLMDAQGEQLHFGGQ 138
                   +P   G  A++GGM +   SG +    G +++  L   ++ AQGE +  G +
Sbjct: 135 DTGLFFPIDP---GADASLGGMASTRASGTNAVRYGTMKENTLTLTVVTAQGEIIKTGTR 191

Query: 139 VMKNVAGYDISRLLAGSLGTLGLILQVSLKVLPRPIASSTRV------------------ 180
             K+ AGYD++R+  GS GTLG+I +V++++ P+P A S  +                  
Sbjct: 192 AKKSSAGYDLTRVYVGSEGTLGIITEVTVRLYPQPEAISAAICSFPTVADAVNTVIQTIQ 251

Query: 181 -------FEINQEGALRLLNQSAGQPLPLVASAWVNNVLTIRLSGAQAAVD--------- 224
                   E+  E  +R +N      LP      VN +L     G++  V          
Sbjct: 252 MGVPLARVELLDENGVRAINAHDKLSLP------VNPLLLFEFHGSENGVKEQAELVQDI 305

Query: 225 -SAIKKMGGTELSNPED---YWT----------DLREQTHPFFADSQAPLWRLSLPSVAP 270
                 +G    + PED    WT           LR        D   P+ RL+   +A 
Sbjct: 306 AKEFHALGFEWATRPEDRTRLWTARHNAYFALLQLRPGARAISTDCCVPISRLAECVLAT 365

Query: 271 PVDLPGRQLIEW---------GGAQRWLRPEGNVD-----AVAIRAAALAVGGHASLHRG 316
             D   + L               Q  + P    D      V  R  A A+G   +    
Sbjct: 366 KADCEEQGLTHAIIGHVGDGNFHVQMMVDPNDPADIARAEGVNQRMVARAIGMDGTC--T 423

Query: 317 GDKAIGVFHPLQPAVE-------TIHRRLKQQFDPQGIFNPGRL 353
           G+  +G  H +   ++        + R +K   DP+ I NPG++
Sbjct: 424 GEHGVG-LHKMDFLIQEHGEGAIAVMRAIKHALDPKNIMNPGKI 466


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,146,432
Number of extensions: 46529
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,212,660
Effective search space: 328630860
Effective search space used: 328630860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)