BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0091.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313119|ref|YP_003777211.1| glycolate oxidase iron-sulfur s...   821   0.0  
gi|300313195|ref|YP_003777287.1| oxidoreductase [Herbaspirillum ...    65   1e-11

>gi|300313119|ref|YP_003777211.1| glycolate oxidase iron-sulfur
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/411 (94%), Positives = 404/411 (98%)

Query: 1   MQTNLADFIRNTQAGEEADSILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE 60
           MQTNLADFIRNTQAG+EADSILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE
Sbjct: 1   MQTNLADFIRNTQAGQEADSILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE 60

Query: 61  GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEEQVQRPFGERVLRTALK 120
           GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEEQV RP  +RV+RTALK
Sbjct: 61  GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEEQVPRPLSQRVMRTALK 120

Query: 121 ELVPRKWIFRPAMKAGQMVRPLLPKLLQNKVPLPQDAGSWPTRTHARQMLLLEGCVQPSM 180
           ELVPRKWIFRPAMKAGQM+RPLLPKLLQNKVPLPQ+AG+WPTRTHARQML LEGCVQPSM
Sbjct: 121 ELVPRKWIFRPAMKAGQMLRPLLPKLLQNKVPLPQEAGAWPTRTHARQMLYLEGCVQPSM 180

Query: 181 APNINSATARVLDALGVQLFAPPKAGCCGAIRYHLNDQDGGLDDMRRNIDAWWPYIEGRD 240
           +PNINSATARVLDALGVQLFAPPKAGCCGAIRYH+NDQ+GGL+DMRRNIDAWWPYIEGRD
Sbjct: 181 SPNINSATARVLDALGVQLFAPPKAGCCGAIRYHMNDQEGGLEDMRRNIDAWWPYIEGRD 240

Query: 241 GVRADTIVMNASGCGATVKEYGHLLQHDPDYAEKARRISRMTRDISEILPEFEEQLQHKL 300
           G+RADTIVMNASGCG+TVKEYGHLLQHDP YAEKARRIS MTRDISEILPEFEE L+HKL
Sbjct: 241 GIRADTIVMNASGCGSTVKEYGHLLQHDPVYAEKARRISHMTRDISEILPEFEEALKHKL 300

Query: 301 KDFNGKRVAYHPPCTLQHGQKIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSVLQPEL 360
           KDFNGKRVAYHPPCTLQHGQKIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYS+LQPEL
Sbjct: 301 KDFNGKRVAYHPPCTLQHGQKIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPEL 360

Query: 361 SYRLRDNKISKLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLDSALQ 411
           SYRLRDNKISKLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLD+ALQ
Sbjct: 361 SYRLRDNKISKLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLDAALQ 411


>gi|300313195|ref|YP_003777287.1| oxidoreductase [Herbaspirillum
            seropedicae SmR1]
          Length = 1333

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 157/438 (35%), Gaps = 80/438 (18%)

Query: 20   SILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGKPATAATQSHL------- 72
            S ++ C+ CG C   C T+    + L  PR +I     ++E       T+  +       
Sbjct: 859  SSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEAFLYEEQTRRGVSIKHWEE 918

Query: 73   -----DRCLTCRNCESTCPSGVQYGRLVDIGRKVVEEQVQRPF--GERVLRTALKELVP- 124
                 D C  C  C + CP  + +G +    R ++ +  ++ F  G       L    P 
Sbjct: 919  FEDVADHCTVCHKCVTPCPVDIDFGDVSMNMRNLLRKMGKKSFNAGTNAAMFFLNATDPA 978

Query: 125  -----RKWIFRPAMKAGQMVRPLLPKLLQNKVPLP-------------------QDAGSW 160
                 RK + +   KA ++   L+ K  + +   P                   +  G+ 
Sbjct: 979  TINATRKVMTQWGFKAQRLGNDLMKKFAKKQTQKPPATVGKPPVKEQVIHFINKKMPGNL 1038

Query: 161  PTRTHARQMLLLE-------------------------GCVQPSMAPNINSATARVLDAL 195
            P +T AR +L +E                         GC    +   +  AT  +L  +
Sbjct: 1039 PKKT-ARALLDIEDDKIVPIIRNPKTTTADTEAVFYFPGCGSERLFSQVGLATQAMLWNV 1097

Query: 196  GVQLFAPPKAGCCGAIRYHLNDQDGGLDDMRRNIDAWWPYIEGRDGVRADTIVMNASGCG 255
            GVQ   PP   CCG  +    D + G   +  N   +       + +   T+V++   C 
Sbjct: 1098 GVQTVLPPGYLCCGYPQRGTGDFEKGEKIITDNRVLFHRMANTLNYLDIKTVVVSCGTC- 1156

Query: 256  ATVKEYGHLLQHDPDYAEKARRISRMTRDISEILPEFEEQLQHKLKDFNGKRVAYHPPCT 315
                 Y  L  ++ +      RI     DI E L E       KL+   G R  YH PC 
Sbjct: 1157 -----YDQLQGYEFEKIFPGCRII----DIHEYLLE----KGVKLEGVTGTRYMYHDPCH 1203

Query: 316  LQHGQKIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSVLQPELSYRLRDNKISKLQAT 375
                Q+   K    L    +D Q    +  CCG +GT+ V +P++S ++R  K  +++  
Sbjct: 1204 SPMKQQDPLKTVNSL-ITTIDAQKIEKNDRCCGESGTFGVSRPDVSTQVRFRKEEEMRKG 1262

Query: 376  DPDMIVTGNIGCVTHLQS 393
               +   G  G V  L S
Sbjct: 1263 SDKVRADGFTGDVKILTS 1280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,321,267
Number of extensions: 56366
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)