BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0087.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313116|ref|YP_003777208.1| hypothetical protein Hsero_3822...   351   2e-98
gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469...    65   2e-12

>gi|300313116|ref|YP_003777208.1| hypothetical protein Hsero_3822
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score =  351 bits (901), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/178 (97%), Positives = 175/178 (98%)

Query: 12  ASAGFLAVRKFLHAGQPSYPRTLDLEADPAEELRITLQPGTPVGPALRRVLARYGQRGGV 71
           ASAGFL VRKFLHAGQPSYPRTLDLEADPAEELRITLQ GT VGPALRRVLARYGQRGGV
Sbjct: 2   ASAGFLEVRKFLHAGQPSYPRTLDLEADPAEELRITLQAGTLVGPALRRVLARYGQRGGV 61

Query: 72  GRLCGGSARRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCH 131
           GRLCGG+ARRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCH
Sbjct: 62  GRLCGGTARRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCH 121

Query: 132 SGFIDGDGTLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPTPME 189
           SGFIDGDGTLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPTPME
Sbjct: 122 SGFIDGDGTLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPTPME 179


>gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469
           [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score = 65.5 bits (158), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 3/167 (1%)

Query: 20  RKFLHAGQPSYPRTLDLEADPAEELRITLQPGTPVGPALRRVLARYGQRGGVGRLCGGSA 79
           R   H G P   R + L A PA +L  TL+ G  +  A+   L+R G  GG  R    + 
Sbjct: 9   RTVRHPGAPDPQRIVSL-AGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTVRFGQLAI 67

Query: 80  RRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCHSGFIDGDG 139
             LH+       D      Y  PH +E          T G+  DG+  +HCH+ + D  G
Sbjct: 68  AELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGRK-DGEPFVHCHAVWRDRQG 126

Query: 140 TLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPT 186
              GGHL+++   VG D       L   +      D ET+F+L +PT
Sbjct: 127 QRQGGHLMMEKTLVGADTPAQAWGLHD-ATMATRYDPETNFTLFYPT 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 547,570
Number of extensions: 18494
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)