BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0084.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313114|ref|YP_003777206.1| acetyl-CoA acetyltransferase [H...   377   e-106

>gi|300313114|ref|YP_003777206.1| acetyl-CoA acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  377 bits (969), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/189 (96%), Positives = 184/189 (97%)

Query: 1   MTVSASSPCITGWNHSQFGKLDGIDPEVLIGQVAKAAIEHAGLQPGDIDSVHFGTFNAGF 60
           MT SASSPCITGW+HSQFGKLDGIDPEVLIGQVAKAAIEHAGLQP DIDSVH GTFNAGF
Sbjct: 1   MTASASSPCITGWHHSQFGKLDGIDPEVLIGQVAKAAIEHAGLQPEDIDSVHVGTFNAGF 60

Query: 61  LYQDFPSSLVLNTLPQLRFKPATRLENACATGSAAIHSGLQAIKAGESKHVLVIGFEKMT 120
           LYQDFPSSLVLNTLPQLRFKPATRLENACATGSAAIHSGLQAIKAGESKHVLVIGFEKMT
Sbjct: 61  LYQDFPSSLVLNTLPQLRFKPATRLENACATGSAAIHSGLQAIKAGESKHVLVIGFEKMT 120

Query: 121 ELATAQVGEVLLKACYAKEEAGIPGGFAGVFGKIAQSYFDRFGDQSDALALIAAKNHKNG 180
           ELAT QVGEVLLKACYAKEEAGIPGGFAGVFGKIAQSYFDRFGDQSDALA+IAAKNHKNG
Sbjct: 121 ELATPQVGEVLLKACYAKEEAGIPGGFAGVFGKIAQSYFDRFGDQSDALAMIAAKNHKNG 180

Query: 181 MVNPYAHME 189
           MVNPYAHM 
Sbjct: 181 MVNPYAHMR 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 618,084
Number of extensions: 25677
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)