BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0074.p
         (298 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314012|ref|YP_003778104.1| phosphate/phosphonate ABC trans...    79   5e-16

>gi|300314012|ref|YP_003778104.1| phosphate/phosphonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 99/234 (42%), Gaps = 17/234 (7%)

Query: 35  PQRLRFSFVPQGRDVDQQSALTPLVEELRERLKMPVDVIIPTSYGGVIEGLIAGAIDVAR 94
           P  L F+F P            P  + L +     V      S    IE + +G + V  
Sbjct: 57  PNTLVFTFTPVEDPAVYDKIFKPFTDYLSQCTAKKVVFFQVQSNAAEIEAMRSGRLHVGG 116

Query: 95  L--GPASYVTARKGDPQITPFASMEQVEPNFAAQGGVSSVYYSL-LITRQQGPYDSVASL 151
              GP ++     G     PFA +   +     QG      Y+L +I R+      +  L
Sbjct: 117 FSPGPTNFAVNIAG---AVPFAVIGDAK---GYQG------YTLNVIVRKDSTIQKMTDL 164

Query: 152 RGKVLALADPDSTSGALIPRHLFARQYKLQFDQYFSRIGYSGNHEKSVLAVLNHNADAAF 211
           +GK +A   P S SG + P  LF +        Y  ++ +SG H++S+L V + + DAA 
Sbjct: 165 KGKKVAHTAPSSNSGHMAPMALFPKLGVTPDKDY--KVIFSGKHDQSILGVNSGDYDAAA 222

Query: 212 VASTNLSRMISDGQLKKSDVRVLWRSGPIPFDPFVYRGQLCADIRNKIREVFLD 265
           VAS    RM+  G +K  + RV+W S   P   F Y   L  + R+K+ + F D
Sbjct: 223 VASDVFDRMVERGVIKAENFRVIWHSEKFPTQDFAYAHDLEPNFRDKMLKCFYD 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 839,752
Number of extensions: 34233
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,217,395
Effective search space: 259305135
Effective search space used: 259305135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)