BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0065.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313091|ref|YP_003777183.1| thiopurine S-methyltransferase ...   404   e-114

>gi|300313091|ref|YP_003777183.1| thiopurine S-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  404 bits (1038), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/225 (88%), Positives = 209/225 (92%), Gaps = 7/225 (3%)

Query: 1   MKAEFWLERWRDGRTHFHQSRVTPLLQKYWPQLALPAGSWVXGAGSTVLVPLCGKSLDML 60
           M+AEFWLERWRDGRTHFHQSRVTPLLQKYWP LALPAGS       TVLVPLCGKSLDML
Sbjct: 1   MEAEFWLERWRDGRTHFHQSRVTPLLQKYWPSLALPAGS-------TVLVPLCGKSLDML 53

Query: 61  WLAEQGHRVLGVELSELAITQFFSEHQLTPAVHESAQGRHYVAGQIELICGDIFALEDAT 120
           WLAEQGHRVLGVELSELAITQFFSEHQL P VHESAQGRHYVAG IELICGDIFALE+AT
Sbjct: 54  WLAEQGHRVLGVELSELAITQFFSEHQLVPLVHESAQGRHYVAGNIELICGDIFALEEAT 113

Query: 121 LANCAGAYDRAALIALPPDMRARYVEEIYGRLPAQARSLLITLEYDQEKMEGPPFSVAEE 180
           LA CAGAYDRAALIALPP MRARYV E+YGRLPAQARSLLITLEYDQ+KM+GPPFSV+EE
Sbjct: 114 LAACAGAYDRAALIALPPAMRARYVTEVYGRLPAQARSLLITLEYDQQKMDGPPFSVSEE 173

Query: 181 EVLRLYAPHSDAVAIDRRDILEKEPKFLERGLRALDTVVYRLQRK 225
           EVLRLYAPHS+A AIDRRDIL+KEPKFLERGL AL+TVVYRLQR+
Sbjct: 174 EVLRLYAPHSEAQAIDRRDILDKEPKFLERGLSALETVVYRLQRR 218


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 750,792
Number of extensions: 31414
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)