BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0061.p
         (133 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313089|ref|YP_003777181.1| glycerol-3-phosphate ABC transp...   233   3e-63
gi|300311925|ref|YP_003776017.1| glycerol-3-phosphate ABC transp...    59   2e-10

>gi|300313089|ref|YP_003777181.1| glycerol-3-phosphate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 437

 Score =  233 bits (595), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 112/115 (97%), Positives = 114/115 (99%)

Query: 1   MNGKKGEEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKSSGFYERNPGTDVA 60
           MNGKK +EYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKSSGFYERNPGTDVA
Sbjct: 311 MNGKKADEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKSSGFYERNPGTDVA 370

Query: 61  VKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKEALDSAVKRGDEL 115
           VKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAK+ALDSAVKRGDEL
Sbjct: 371 VKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKDALDSAVKRGDEL 425


>gi|300311925|ref|YP_003776017.1| glycerol-3-phosphate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 452

 Score = 58.5 bits (140), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 1   MNGKKGEEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTK-AAYELTKSSGFYERNPGTDV 59
           M G   + Y  VA F +YL +P+      + TGYLPVT+  A ++      Y   P   V
Sbjct: 323 MKGFDRQVYAAVAAFIAYLQQPQNQRLLARQTGYLPVTRQVAAQIMDDPDHY---PAAVV 379

Query: 60  AVKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKEALDSAVKRGDEL 115
           A    +   ++   G RLG + Q+R  + E+++   +G++   +AL  A +RGD L
Sbjct: 380 AGIHSLDAASQPGVGPRLGFFPQLRLAWTEQVQMALSGQQDMAQALSKARQRGDAL 435


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.128    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 384,705
Number of extensions: 13307
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 58
Effective length of database: 1,264,745
Effective search space: 73355210
Effective search space used: 73355210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)