BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0058.p (364 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 704 0.0 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 369 e-103 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 355 2e-99 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 333 1e-92 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 316 2e-87 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/363 (95%), Positives = 352/363 (96%) Query: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDADIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MAAIHLKQVRKTYGAGTKAVDVIHGIDA+IADGEFIVMVGPSGCGKSTLLRMVAGLEE+S Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 61 SGQIVIGKRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKTEIDERVQR 120 SGQIVIG RVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSK+EID RVQR Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 241 PPMNLLQGSLSADGASFEASKGAATATVRLPQPVAGAAGQERILGVRPEHLLPILDGSAA 300 PPMNLLQG LSADGASFE SKG A+ +RLPQP+ GAAGQERILGVRPEHLLPILDGSAA Sbjct: 241 PPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDGSAA 300 Query: 301 QLSLEVELVEALGAELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAGDVHWFDVKST 360 QLSLEVELVEALGAELLVHARCGGQ+LVLRCPANV V TGQRIGASFGAGDVHWFDVKST Sbjct: 301 QLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVKST 360 Query: 361 HRI 363 RI Sbjct: 361 RRI 363 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust. Identities = 202/381 (53%), Positives = 257/381 (67%), Gaps = 39/381 (10%) Query: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDADIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA++ ++ V+K +G+ +I G+D DIADGEF V+VGPSGCGKSTLLRM+AGLEE++ Sbjct: 1 MASVQIRAVKKQFGS----TQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEIT 56 Query: 61 SGQIVIGKRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKTEIDERVQR 120 G+I+IG VVN+++PK+RDIAMVFQNYALYPHMTV NMA+ L + K +DERV++ Sbjct: 57 GGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKK 116 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA IL L LL+R PRQLSGGQRQRVAMGRAIVR P VFLFDEPLSNLDAKLRVQMR EI Sbjct: 117 AADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEI 176 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 ++LH L+TTS+YVTHDQ+EAMT+ +++VM G+ EQ G P ++Y PA FVA FIGS Sbjct: 177 KELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGS 236 Query: 241 PPMNLLQGSL--SADGASFEASKGAATATVRLPQP----VAGAAGQERILGVRPEHLLPI 294 P MN + +L +A GA E + G R+P P + G GQ+ GVRPEHL Sbjct: 237 PAMNFIPATLRRNATGAEVEFADG-----TRVPAPYGAALQGNDGQKVTYGVRPEHLSI- 290 Query: 295 LDGSAAQ-LSLEVELVEALGAELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAGDV- 352 G+A Q ++ +V +VE GA+ V +R G SL ++ R FGAGDV Sbjct: 291 --GAAGQGIATKVIVVEPTGADTEVFSRFGDTSL----------TSIFRERHDFGAGDVI 338 Query: 353 ---------HWFDVKSTHRIA 364 H FD +S +A Sbjct: 339 HLVPDHSRTHLFDAESGKSLA 359 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 355 bits (912), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 192/360 (53%), Positives = 240/360 (66%), Gaps = 6/360 (1%) Query: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDADIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA +++KQ+RKTY DV+ G++ DI DGEF V+VGPSGCGKSTLLRM+ GLEE+S Sbjct: 1 MAHVNIKQLRKTYDG---RADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEIS 57 Query: 61 SGQIVIGKRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKTEIDERVQR 120 G++ IG +VVN L P ER IAMVFQ+YALYPHM VY+NMA+GLK+ G SK++ID R++ Sbjct: 58 GGELAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRH 117 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AAAIL++ LL+R PR+LSGGQRQRVA+GRAIVR+P +FLFDEPLSNLDA LRVQ RLEI Sbjct: 118 AAAILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEI 177 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 KLH L T +YVTHDQVEAMTLG +++VM+ G +Q GTP E+Y +P FVA FIGS Sbjct: 178 AKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGS 237 Query: 241 PPMNLLQGSLS-ADGASFEASKGAATATVRLPQPVAGAAGQERILGVRPEHLLPILDGSA 299 P MN QG ++ D + + + P+ G LG+R E + L G Sbjct: 238 PKMNFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGL-GDG 296 Query: 300 AQLSLEVELVEALG-AELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAGDVHWFDVK 358 L V LVE LG A L GG +V+R N V GQ I S + H FD + Sbjct: 297 QPLHGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFDAQ 356 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 333 bits (854), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 182/363 (50%), Positives = 237/363 (65%), Gaps = 19/363 (5%) Query: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDADIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MAA+ ++ + K Y +V+ I+ +I DGEF+V VGPSGCGKSTLLRM+AGLEE+S Sbjct: 1 MAAVSIRNLAKRYDDN----EVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEIS 56 Query: 61 SGQIVIGKRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKTEIDERVQR 120 G + IG R +N++ +R +AMVFQ+YALYPHM++Y NMA+GLKI G SK EID VQ Sbjct: 57 DGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQH 116 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA IL + LL+R PR LSGGQRQRVA+GRAI R+P+VFLFDEPLSNLDA LRV+MRLE Sbjct: 117 AAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF 176 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 KLH L+TT +YVTHDQ+EAMTL +++V++ G EQ+G+P ++Y PA FVA FIGS Sbjct: 177 AKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGS 236 Query: 241 PPMNLLQGSLS---ADGASFEASKGAATATVRLPQPVAGAA---GQERILGVRPEHLLPI 294 P MN + G+++ ADG + G V G+ GQ+ LGVRPEH L I Sbjct: 237 PKMNFIDGTVAAIQADGVQVQLPGGGLQWAA-----VDGSTLQVGQKVTLGVRPEH-LNI 290 Query: 295 LDGSAAQLSLEVELVEALGAELLVHARCGG--QSLVLRCPANVPVSTGQRIGASFGAGDV 352 G AA L +E LG ++A G +L+LR P ++ G + + Sbjct: 291 AQGQAA-LQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARC 349 Query: 353 HWF 355 H F Sbjct: 350 HLF 352 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 316 bits (810), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 183/370 (49%), Positives = 243/370 (65%), Gaps = 12/370 (3%) Query: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDADIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA IH + + K Y G V+H +D I DGEF+V++GPSGCGKST+LRM+AGLE++S Sbjct: 1 MADIHCQALAKHYAGGPP---VLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDIS 57 Query: 61 SGQIVIGKRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKTEIDERVQR 120 G + IG VVNDL +ER++AMVFQNYALYPHM+VY N+A+GL+ EID RV+ Sbjct: 58 GGTLRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVRE 117 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA+L L ALLER PR +SGGQ+QR A+ RAI++ P+VFLFDEPLSNLDAKLR Q+R +I Sbjct: 118 VAALLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDI 177 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 ++LH LRTT++YVTHDQ+EAMTL R+I+M G Q G+PAE+Y P F A FIG+ Sbjct: 178 KRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGT 237 Query: 241 PPMNLLQGSLS-ADGASF--EASKGAATATVRLPQPVAGAAGQERILGVRPEHL-LPILD 296 P MN L G++ DG F A + A R + A + L VRP+H+ + Sbjct: 238 PAMNFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMAVK---LAVRPDHVRIAGER 294 Query: 297 GSAAQLS--LEVELVEALGAELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAGDVHW 354 AA L+ + VELVE LGA+ L+ RCG Q+L PA+ G + + ++H Sbjct: 295 EPAASLTCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHV 354 Query: 355 FDVKSTHRIA 364 FDV+S ++ Sbjct: 355 FDVESGENLS 364 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,046,255 Number of extensions: 40029 Number of successful extensions: 532 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 338 Number of HSP's successfully gapped: 139 Length of query: 364 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 278 Effective length of database: 1,212,660 Effective search space: 337119480 Effective search space used: 337119480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)