BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0054.p
         (385 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313082|ref|YP_003777174.1| phosphoesterase [Herbaspirillum...   649   0.0  

>gi|300313082|ref|YP_003777174.1| phosphoesterase [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/383 (88%), Positives = 356/383 (92%)

Query: 1   MRRSLFSLLTVLGLLAALHAWIGWQLLPALTTHAGWITLGAAVLLLSFLLMPVALAVPYL 60
           MRRS   +   LGLLAALH WIGWQLLPAL+T AGWITLG  VL LSFLLMP+AL  PYL
Sbjct: 64  MRRSYVGVAVFLGLLAALHVWIGWQLLPALSTQAGWITLGGVVLALSFLLMPIALVAPYL 123

Query: 61  KRRGLSEIAADRVAWAGMLAMGAFSSALLLTLLRALALAALPWLHLPPIQQHEMVELSAW 120
           KR+GL E+ +DR++WAGMLAMGAFSSALL TLLRA+ALA LPWL L PIQ+HEM+EL+AW
Sbjct: 124 KRQGLPEVWSDRLSWAGMLAMGAFSSALLATLLRAIALALLPWLPLSPIQRHEMIELTAW 183

Query: 121 LVLALTAAATVIGYLNARRTAAVVEVSVPIANLPAALEGFTIVQISDIHVGPTIKAPYLQ 180
           L LALTA ATVIGYLNARRTAAVVEVSVPIANLPAALEGF+IVQISDIHVGPTIKAPYLQ
Sbjct: 184 LALALTAVATVIGYLNARRTAAVVEVSVPIANLPAALEGFSIVQISDIHVGPTIKAPYLQ 243

Query: 181 AIVDKVNALQPDVVAITGDLVDGSVRQLAPHTAPLAQLRARHGAYFVTGNHEYYSNAHEW 240
           AIVDKVNAL PDVVAITGDLVDGSVRQLAPHTAPLAQLRARHGAYFVTGNHEYYSNAHEW
Sbjct: 244 AIVDKVNALSPDVVAITGDLVDGSVRQLAPHTAPLAQLRARHGAYFVTGNHEYYSNAHEW 303

Query: 241 IDEVRRLGVTVLMNEHVVLRHEGAGLVLAGVTDYTAHHFDEAHRSDPHAAIADAPTGHPR 300
           I+EVRRLG+TVLMNEHVVLRH+ AGLVLAGVTDYTAHHFD AHRSDPHAAIADAP GHPR
Sbjct: 304 IEEVRRLGLTVLMNEHVVLRHDDAGLVLAGVTDYTAHHFDPAHRSDPHAAIADAPDGHPR 363

Query: 301 VLLAHQPRSATAAVEAGFDLQLSGHTHGGQFFPWNFFVPLQQPYVAGLKRLQGLWIYVSR 360
           +LLAHQPRSA AA EAGFDLQLSGHTHGGQFFPWNFFVPLQQPYVAGLKRLQGLW+YVSR
Sbjct: 364 ILLAHQPRSAQAAAEAGFDLQLSGHTHGGQFFPWNFFVPLQQPYVAGLKRLQGLWVYVSR 423

Query: 361 GTGYWGPPKRLLAPSEITRVRLT 383
           GTGYWGPPKRLLAPSEITRVRLT
Sbjct: 424 GTGYWGPPKRLLAPSEITRVRLT 446


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,127,930
Number of extensions: 46488
Number of successful extensions: 264
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,207,925
Effective search space: 359961650
Effective search space used: 359961650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)