BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0051.p
         (374 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313080|ref|YP_003777172.1| major facilitator superfamily p...   432   e-122

>gi|300313080|ref|YP_003777172.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  432 bits (1111), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 285/373 (76%), Positives = 299/373 (80%), Gaps = 16/373 (4%)

Query: 1   VTSLVLRSDYHLSNAQLGLALGLLSLGVALGELPWGVLTDRLGDRKVLLAGLLGTSAALC 60
           VTS+VLRSDY LSN QLGLALGLLSLGVALGELPWGVLTDR GDRKVLLAGLLG SAAL 
Sbjct: 42  VTSVVLRSDYRLSNTQLGLALGLLSLGVALGELPWGVLTDRWGDRKVLLAGLLGASAALG 101

Query: 61  LLMAMARPGQGGSAFVWLCVGLTLAGLLGGSVNGASGRAIMAWFAEGERGLAMSIRQTAV 120
           LLM  A PGQG ++F WLC GL LAGLLGGSVNGASGRAIM WF EGERGLAMSIRQTAV
Sbjct: 102 LLMLYALPGQGAASFAWLCAGLMLAGLLGGSVNGASGRAIMGWFGEGERGLAMSIRQTAV 161

Query: 121 PLGGGIGALLLPTLAARAGFGAVYGFLMTLCMTSVALVLLWLREAHEASPSHTA---TAP 177
           PLGGG+GALLLPTLAA+AGFGAV+  LM  C+ SV LVL WLREA  A P+H A      
Sbjct: 162 PLGGGLGALLLPTLAAQAGFGAVFAALMAACLASVGLVLRWLREAPVA-PAHGAAPVVGA 220

Query: 178 AMPALRSPLVWRLALGTGLLCAPQVALISFGGIFLHEVGQAGLLLISVLLTLVQVGAAVA 237
           A  ALRS LVWRLALG GLLCAPQVAL+SFGGIFL E  QA +L ISVLLTLVQ+GAA A
Sbjct: 221 ASMALRSKLVWRLALGIGLLCAPQVALLSFGGIFLQESAQASVLAISVLLTLVQLGAAAA 280

Query: 238 RIASGRWTDRRGQRRPYLRACALGSALLFLLLGVSSLSGLSVSLQWLGGVLVVAGVVVSA 297
           RIASGRWTDRRGQRR YLR CAL SA LF LLGV            L  +LV AGVVVSA
Sbjct: 281 RIASGRWTDRRGQRRDYLRGCALASAALFGLLGV------------LAPLLVAAGVVVSA 328

Query: 298 WHGVAYTELAVAAGPAQVGTALGLGNSCVFGVFFLTAQAIPLLLQWHGWPAVWIVTAAVA 357
           WHGVAYTELAV AG  QVGTALGLGNSCVF VFFL AQAIP LL W GWPAVW+  A VA
Sbjct: 329 WHGVAYTELAVVAGAGQVGTALGLGNSCVFLVFFLAAQAIPPLLHWQGWPAVWLAIAVVA 388

Query: 358 LLVWPLFPPARKA 370
           LLVWPLFPP  +A
Sbjct: 389 LLVWPLFPPEDRA 401


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 942,971
Number of extensions: 34223
Number of successful extensions: 335
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 6
Length of query: 374
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,207,925
Effective search space: 346674475
Effective search space used: 346674475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)