BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0045.p
         (338 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313543|ref|YP_003777635.1| xylanase/chitin deacetylase [He...    92   4e-20

>gi|300313543|ref|YP_003777635.1| xylanase/chitin deacetylase
           [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 125/279 (44%), Gaps = 24/279 (8%)

Query: 32  FGYSPIHRRPDYCWPNGARLAVYLGFNIEH----------FAFGEGLGAKLGPVC-PEPD 80
           +G +P H R    WP  AR+A+    N E            A  + L   +G    P   
Sbjct: 14  YGRNPPHAR----WPGQARVALQFVLNYEEGGENCVLHGDAASEQFLSEIVGAAAYPARH 69

Query: 81  VLNYAWREYGNRVGAWRCLELFEQLGLPAGVLINTALYDHCPELVEAFAARGDELIGHGH 140
           +   +  EYG+RVG WR L  FE+ GLP  V          PE+ +AF   G E+  HG 
Sbjct: 70  MSMESIYEYGSRVGVWRILREFEKRGLPLTVFGVAMALQRSPEVTQAFVELGHEIACHGL 129

Query: 141 TNAHQQGTLDEEAEAALLRHCRTRIQAESGVQPTGWLSPWISESLVTPDLLQE-TGYRYN 199
              H Q ++D E E A +R      +  +G  P GW +    +S  T  L+ E  G+ Y+
Sbjct: 130 RWIHYQ-SMDIETERAHMREAVQIFRELTGSAPLGWYTG--RDSPNTRQLVVEHGGFVYD 186

Query: 200 LNWAHDDQPVRMRTRTGETLWS----IPYPQELNDIPMIVARQMDGRD-FARMIVDNFDE 254
            ++  DD P      T   + +    +PY  + ND+     +  +  + F + + D+FD 
Sbjct: 187 SDYYGDDLPFWTEVETAAGVKAPHLVVPYTLDSNDMRFATPQGFNTSEHFFQYLKDSFDV 246

Query: 255 MREQALRQPLVMGIALHPYLVGQPYRLRHLRTALQHLAA 293
           + E+    P ++ I +H  L+G+P R R L+  L ++ +
Sbjct: 247 LYEEGEEAPKMLSIGMHCRLLGRPGRFRALQRFLDYVQS 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,209,256
Number of extensions: 53732
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,212,660
Effective search space: 305590320
Effective search space used: 305590320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)