BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0041.p (858 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t... 322 6e-89 gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC t... 284 2e-77 gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC t... 273 5e-74 gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp... 263 5e-71 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 223 6e-59 >gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 655 Score = 322 bits (826), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 224/647 (34%), Positives = 343/647 (53%), Gaps = 77/647 (11%) Query: 36 LAFSAVGLIAAITLALSI-NSYYVFVLAGIALVAIVGIGLNVLIGLTGQVSFGHVGFYAV 94 L S +G++A + + + N YY+ ++ I + AI+ GL++++G TGQVS GH G + + Sbjct: 6 LLLSLLGIVALAGIPMVVHNPYYLHLIETILIYAILLFGLDIVVGYTGQVSLGHAGLFGI 65 Query: 95 GAYTVAILTTKAGLSFWLAWPLAAVVAGALGVLLALPALRVKGPYLAMITIAFSFIIQHA 154 G+Y +L K G+ ++ P A V G +LALPALRV GPYLAM+T+AF IIQ Sbjct: 66 GSYAAGVLFFKLGMPIFVTVPAAIAVTAVFGAILALPALRVTGPYLAMVTLAFGTIIQIL 125 Query: 155 IIELRDLTGGQNGIMGLAAPAFLG-----LQAERAIAVLGLITAAVVLAAYCWLSRGSWG 209 I E+ LT G GI L P G +Q +AVL +++ VV + + + G Sbjct: 126 INEMTFLTEGPLGI-KLQKPMIGGDKMSEVQFFYLVAVLMVLSMLVV----HRILKSNLG 180 Query: 210 AAMRAVRDSETAAESIGLNPLVIKTVAFALSAALAGLAGGLFAPLSTFVTPDTFSFMQSI 269 A +A+RDS A++ +G++ K AF +SAALAGL+G L+A +++P+T++F +I Sbjct: 181 RAFQALRDSPIASDCMGVSVYRYKVYAFIISAALAGLSGALYAYSEEYISPNTYNFELTI 240 Query: 270 LFVLVVVLGGSGSILGPVIGAVIVGALPELLS---------------------------- 301 +F+L V++GG S +G +IGA+IV LP LLS Sbjct: 241 MFLLAVIMGGRKSRIGSLIGALIVVMLPSLLSDIALFRQIATVLAVIVVVGAGVQVARKT 300 Query: 302 ------------------------SLEDYRLLFFGALLLLVLWVAPDGVTGLLGKLAARL 337 ++ D+RL FG + L V++ DG+ G L R+ Sbjct: 301 KTVRGVIVPVVATIAMAAFSYKLENITDWRLTIFGLMTLFVVYYLQDGIVGFCRTLFGRV 360 Query: 338 RKPVEAVPAAA-LQEDAEEVALPVRARRT-----LAADGLTMVFGGVRAVSDLGFEVPGG 391 + VP A + D E + + + L + + M FGG++A++ + +V G Sbjct: 361 LT--KHVPVAQQIAGDKERAVITTDSVKDAGATLLKVNQILMQFGGLKALNRVDLDVRKG 418 Query: 392 AVTSLIGPNGAGKTTALNMLSGFYRPSAGQFTLGQTPLAGLPAFRIARHGVARTYQTSQL 451 V LIGPNG+GK+T +N+L+G YRP+ G P++G IA GVART+Q QL Sbjct: 419 TVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEYDGRPISGNVPSAIALGGVARTFQNVQL 478 Query: 452 FGSLTVTDNVALACGRGRLGGLLSARGFVSGEVRARCRQ------LLDFCGYRGALDIPS 505 FG +T T+NV + ++ VR +L+F G + + Sbjct: 479 FGEMTATENVLVGLHHTFNSNVVDVMANTPRYVREEQAARERAAAILEFVGLANLANEEA 538 Query: 506 ADLAHVDRRLVEIARALAADPDVLLLDEPAAGLSREDKTMLAQLLTRIAEAGISVVVVEH 565 +L + +RL+EI RAL +P +LLLDEPAAGL+ D L ++ +I EAGI+++++EH Sbjct: 539 RNLPYGKQRLLEIGRALGLNPSLLLLDEPAAGLTAPDIKELVAIIRKIREAGITIILIEH 598 Query: 566 DMELVMQISRRIVVLDAGQRLAIGTPQEVQNDPAVRKAYLGEGTQQA 612 M++VM I + VLD GQ++A G P +VQ DP V +AYLG G A Sbjct: 599 HMDVVMSICDTVTVLDFGQKIAEGKPAQVQADPKVIEAYLGSGAGDA 645 Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 131/268 (48%), Gaps = 23/268 (8%) Query: 610 QQAVAAVRKAVSGADELLGVGELVTGYGAEPVLHGINLQVRQGEMIALLGANGAGKSTLM 669 ++AV LL V +++ +G L+ ++L VR+G + L+G NG+GKST+M Sbjct: 376 ERAVITTDSVKDAGATLLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMM 435 Query: 670 RSLAGLHRPVQGGIHAGGVNLMHLRAEQIVRHGVVLVPEGRQVFPELSVLDNIRLGAFLY 729 L G++RP G + G + I GV + Q+F E++ +N+ +G Sbjct: 436 NVLTGIYRPTDGVVEYDGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLH-- 493 Query: 730 PQDVEARVEEMLGRFPR--------------------LRERLHHRAGLLSGGEQQMLAIA 769 + V +++ PR L + A L G+Q++L I Sbjct: 494 -HTFNSNVVDVMANTPRYVREEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIG 552 Query: 770 RXLMSRPRVLLLDEPSLGLAPKVIAELFAALDQLRRENMTIVLVDQMAALALSLADRAYV 829 R L P +LLLDEP+ GL I EL A + ++R +TI+L++ + +S+ D V Sbjct: 553 RALGLNPSLLLLDEPAAGLTAPDIKELVAIIRKIREAGITIILIEHHMDVVMSICDTVTV 612 Query: 830 IEGGRVVAQGTAAEIAANDALAKAYLGA 857 ++ G+ +A+G A++ A+ + +AYLG+ Sbjct: 613 LDFGQKIAEGKPAQVQADPKVIEAYLGS 640 >gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC transporter ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 596 Score = 284 bits (726), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 205/592 (34%), Positives = 320/592 (54%), Gaps = 40/592 (6%) Query: 43 LIAAITLAL---SINSYYVFVLAGIALVAIVGIGLNVLIGLTGQVSFGHVGFYAVGAYTV 99 L AI LAL + ++V +L+ + L AIV +GL +L G+ G +SFG F +GAYT Sbjct: 14 LFFAIVLALPQLGLPPFWVTLLSYVGLYAIVALGLVLLTGVAGLISFGQAAFVGMGAYTT 73 Query: 100 AILTTKAGLSFWLAWPLAAVVAGALGVLLALPALRVKGPYLAMITIAFSFIIQHAIIELR 159 A LTT+ GLS W+ + L+ +R+ G YL + TIA+ + + L Sbjct: 74 AYLTTQFGLSPWIGLLAGIALTACSAFLIGSLTMRISGHYLPLSTIAWGLSLYYLFGNL- 132 Query: 160 DLTGGQNGIMGLAAPAFLGLQAERAIAVLGLITAAVVLAAYCWLS--RGSWGAAMRAVRD 217 ++ G +GI G+ ++ ++ LI ++LA ++ G A+RA+R Sbjct: 133 EMLGKHDGINGIPVITIGSVEFGNGASMYLLIWVVLILALVSVVNFLDSRAGRAVRALRF 192 Query: 218 SETAAESIGLNPLVIKTVAFALSAALAGLAGGLFAPLSTFVTPDTFSFMQSILFVLVVVL 277 E++G++ +K V F +A LAG++G L+A L V P F I ++L+VV+ Sbjct: 193 GTVMPEAMGVDTARLKIVIFVYAAVLAGISGWLYAHLQQAVNPTPFGLKYGIDYLLMVVV 252 Query: 278 GGSGSILGPVIGAVIVGAL--------PELLSSLEDYRLLFFGALLLLVLWVAPDGVTGL 329 GG+G + G ++GA ++ L P +L + ++ + FG L++ L A +G L Sbjct: 253 GGAGHVAGAILGAGLLAVLSNFLQEWLPGVLGTGGNFEAIVFGIALVIFLQFANEG---L 309 Query: 330 LGKLAARLRK------PVEAVPAAALQEDAE-EVALPVRARRTLAADGLTMVFGGVRAVS 382 +L AR + P +A P A + + A EV L V A R FGG+ AV+ Sbjct: 310 WPRLQARFGRRRPRPLPADAAPLAQMAKPARGEVILDVEAARK--------QFGGLVAVN 361 Query: 383 DLGFEVPGGAVTSLIGPNGAGKTTALNMLSGFYRPSAGQFTLGQTPLAGLPAFRIARHGV 442 ++ F V G + LIGPNGAGK+T N+++G S+G+ LAGL + I+ G+ Sbjct: 362 NVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSVSSGKLLYRGQSLAGLSSRDISSRGI 421 Query: 443 ARTYQTSQLFGSLTVTDNVAL--------ACGRGRLGGLLSARGFVSGEVRARCRQLLDF 494 ART+Q +L ++V +N A+ A RG L LL A + + R+ L+ Sbjct: 422 ARTFQHVRLVPGMSVLENAAMGAFRRGQFAPQRGILASLLRANRSEEARILSEARRQLER 481 Query: 495 CGYRGALDIPSADLAHVDRRLVEIARALAADPDVLLLDEPAAGLSREDKTMLAQLLTRIA 554 G +D P+ LA +R++EIARAL DP +LLLDEPAAGL ++K LA LL ++ Sbjct: 482 VGLGDLVDRPAGSLALGQQRILEIARALCCDPALLLLDEPAAGLRLKEKEALAALLDKLR 541 Query: 555 EAGISVVVVEHDMELVMQISRRIVVLDAGQRLAIGTPQEVQNDPAVRKAYLG 606 G++V++VEHDM+ VMQ++ IVV++ G ++A GTP ++Q PAV +AYLG Sbjct: 542 GEGMAVLLVEHDMDFVMQLTDHIVVMEFGAKIAEGTPAQIQVHPAVLEAYLG 593 Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 124/240 (51%), Gaps = 19/240 (7%) Query: 636 YGAEPVLHGINLQVRQGEMIALLGANGAGKSTLMRSLAGLHRPVQGGIHAGGVNLMHLRA 695 +G ++ ++ V+ GE++ L+G NGAGKST + G+ G + G +L L + Sbjct: 354 FGGLVAVNNVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSVSSGKLLYRGQSLAGLSS 413 Query: 696 EQIVRHGVVLVPEGRQVFPELSVLDNIRLGAF----LYPQ------------DVEARV-E 738 I G+ + ++ P +SVL+N +GAF PQ EAR+ Sbjct: 414 RDISSRGIARTFQHVRLVPGMSVLENAAMGAFRRGQFAPQRGILASLLRANRSEEARILS 473 Query: 739 EMLGRFPR--LRERLHHRAGLLSGGEQQMLAIARXLMSRPRVLLLDEPSLGLAPKVIAEL 796 E + R L + + AG L+ G+Q++L IAR L P +LLLDEP+ GL K L Sbjct: 474 EARRQLERVGLGDLVDRPAGSLALGQQRILEIARALCCDPALLLLDEPAAGLRLKEKEAL 533 Query: 797 FAALDQLRRENMTIVLVDQMAALALSLADRAYVIEGGRVVAQGTAAEIAANDALAKAYLG 856 A LD+LR E M ++LV+ + L D V+E G +A+GT A+I + A+ +AYLG Sbjct: 534 AALLDKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGAKIAEGTPAQIQVHPAVLEAYLG 593 >gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 597 Score = 273 bits (698), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 209/582 (35%), Positives = 307/582 (52%), Gaps = 35/582 (6%) Query: 51 LSINSYYVFVLAGIALVAIVGIGLNVLIGLTGQVSFGHVGFYAVGAYTVAILTTKAGLSF 110 L ++V I L A+V IGL +L G+ G SFG F +GAYT + LTT G+S Sbjct: 22 LPTPQFWVIQANYIGLYALVAIGLVLLTGIGGMTSFGQAAFVGMGAYTTSYLTTVHGVSP 81 Query: 111 WLAWPLAAVVAGALGVLLALPALRVKGPYLAMITIAFSFIIQHAIIELRDLTGGQNGIMG 170 WL P+ + G +L LR+ G YL + TIA+ I + + D G +GI G Sbjct: 82 WLTLPVGLFITGVSAYVLGRITLRMSGHYLPLATIAWG-ISLYFLFGKVDFLGKYDGISG 140 Query: 171 LAAPAFLGLQAERAIAVLGLITAAVVLAAYCWL----SRGSWGAAMRAVRDSETAAESIG 226 + A GL + + LI A V+ AA+ L SR G A+RA++ + AE++G Sbjct: 141 IPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDSRA--GRAIRALKGGRSMAEAMG 198 Query: 227 LNPLVIKTVAFALSAALAGLAGGLFAPLSTFVTPDTFSFMQSILFVLVVVLGGSGSILGP 286 ++ K + F +A LA ++G LFA + V P FS I ++ +VV+GG I G Sbjct: 199 VDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLAMGIEYLFIVVVGGIAHIWGA 258 Query: 287 VIGAVIVGAL--------PELLSSLEDYRLLFFGALLLLVLWVAPDGVTGLLGKLAARLR 338 ++GA ++ L P LL Y + FG +L+L+L A G+ + L R Sbjct: 259 LLGAGVLKLLSDQLQVLLPALLGDGGSYESIVFGLILILLLKYAGGGLWPWVRALWLRAF 318 Query: 339 KPVEAVPAAALQEDAEEVALPVRARRTLAADGLTMVFGGVRAVSDLGFEVPGGAVTSLIG 398 A A ++ A R L D + FGG+ AV+D+ F+V G + LIG Sbjct: 319 PTAPAPLRVAHATAMDKRAAVARGAPLLEVDQINKRFGGLVAVNDVSFKVKAGEIVGLIG 378 Query: 399 PNGAGKTTALNMLSGFYRPSAGQFTLGQTPLAGLPAFRIARHGVARTYQTSQLFGSLTVT 458 PNGAGK+T N+++G S G+ +AGLPA IAR G+ART+Q +L +TV Sbjct: 379 PNGAGKSTTFNLVTGLLHASGGRVGFNGRDIAGLPARAIARLGIARTFQHVRLLPGMTVL 438 Query: 459 DNVALACGRGRLGGLLSARGFVSGEV-------RARCRQLLD-------FCGYRGALDIP 504 +NVAL + S +GF+ V RA + LLD G + + Sbjct: 439 ENVALGAH------MRSQQGFLKNTVNAMLHLERAEEQALLDEAARALHRVGLQHLMHEQ 492 Query: 505 SADLAHVDRRLVEIARALAADPDVLLLDEPAAGLSREDKTMLAQLLTRIAEAGISVVVVE 564 + +LA +R++EIARAL DP +LLLDEPAAGL +K L+++L + G+S+++VE Sbjct: 493 AGNLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKVLQELRADGMSILLVE 552 Query: 565 HDMELVMQISRRIVVLDAGQRLAIGTPQEVQNDPAVRKAYLG 606 HDME VM+++ IVV++ G ++A GTPQE+ PAV +AYLG Sbjct: 553 HDMEFVMELTDHIVVMEFGAKIAEGTPQEIARHPAVIEAYLG 594 Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 136/259 (52%), Gaps = 19/259 (7%) Query: 617 RKAVSGADELLGVGELVTGYGAEPVLHGINLQVRQGEMIALLGANGAGKSTLMRSLAGLH 676 R AV+ LL V ++ +G ++ ++ +V+ GE++ L+G NGAGKST + GL Sbjct: 336 RAAVARGAPLLEVDQINKRFGGLVAVNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLL 395 Query: 677 RPVQGGIHAGGVNLMHLRAEQIVRHGVVLVPEGRQVFPELSVLDNIRLGAFLYPQD---- 732 G + G ++ L A I R G+ + ++ P ++VL+N+ LGA + Q Sbjct: 396 HASGGRVGFNGRDIAGLPARAIARLGIARTFQHVRLLPGMTVLENVALGAHMRSQQGFLK 455 Query: 733 --VEA-----RVEE--MLGRFPR------LRERLHHRAGLLSGGEQQMLAIARXLMSRPR 777 V A R EE +L R L+ +H +AG L+ G+Q++L IAR L P Sbjct: 456 NTVNAMLHLERAEEQALLDEAARALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPL 515 Query: 778 VLLLDEPSLGLAPKVIAELFAALDQLRRENMTIVLVDQMAALALSLADRAYVIEGGRVVA 837 +LLLDEP+ GL L L +LR + M+I+LV+ + L D V+E G +A Sbjct: 516 LLLLDEPAAGLRHLEKQALSKVLQELRADGMSILLVEHDMEFVMELTDHIVVMEFGAKIA 575 Query: 838 QGTAAEIAANDALAKAYLG 856 +GT EIA + A+ +AYLG Sbjct: 576 EGTPQEIARHPAVIEAYLG 594 >gi|300310683|ref|YP_003774775.1| amino acid ABC transporter composite ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 627 Score = 263 bits (671), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 206/586 (35%), Positives = 321/586 (54%), Gaps = 39/586 (6%) Query: 56 YYVFVLAGIALVAIVGIGLNVLIGLTGQVSFGHVGFYAVGAYTVAILTTKA----GLSFW 111 +Y+ +L I L ++V +GL +L G+ G SFG F +GAY A L+ K W Sbjct: 31 FYMTLLNNIGLASLVVLGLVLLTGVAGLTSFGQAAFVGLGAYFSAALSAKVLPLPEALLW 90 Query: 112 LA--WPLAAVVAGALGVLLALP----ALRVKGPYLAMITIAFSFIIQHAIIELRDLTGGQ 165 L WP A VA L LLA L++ G YL + TIA+ I + I + GGQ Sbjct: 91 LQSPWP-ALAVALVLTALLAFAVGSVTLKLSGHYLPLGTIAWG-ISLYFIFGTLESMGGQ 148 Query: 166 NGIMGLAAPAFLGLQAERAIAVLGLITAAVVL--AAYCWLSRGSWGAAMRAVRDSETAAE 223 G+ G+ + AFLG+ + A+ GLI AV+L AA L G A+RA++ AE Sbjct: 149 TGMSGIPSIAFLGVVLDSDRAMFGLIWVAVLLGVAALRNLLDSREGRAIRALKGGIVMAE 208 Query: 224 SIGLNPLVIKTVAFALSAALAGLAGGLFAPLSTFVTPDTFSFMQSILFVLVVVLGGSGSI 283 ++G+N ++ V F ++A LA L+G L+ + FV P F I ++ + VLGG+ + Sbjct: 209 AMGVNTARMRIVVFVIAAVLAALSGWLYVHMQRFVNPSPFGLGFGIDYLFMAVLGGASHV 268 Query: 284 LGPVIGAVIV--------GALPELLSSLEDYRLLFFGALLLLVLWVAPDGVTGLLGKLA- 334 G V+G+ ++ G LP +L ++ + FG L++++L + +G+ L +LA Sbjct: 269 WGAVLGSSLIVVLKEWLQGLLPVVLGRSGNFETIVFGLLIVVLLQRSREGIWPYLARLAP 328 Query: 335 ARLRKPVEAVPAAALQE----DAEEVALPVRARRTLAADGLTMVFGGVRAVSDLGFEVPG 390 R R+ V A AL +EV L VR+ +T FGG+ A +++ +V Sbjct: 329 VRTRRLVIDAQAEALPRRPMPTPQEVVLDVRS--------VTRKFGGLVANNNMSLKVMA 380 Query: 391 GAVTSLIGPNGAGKTTALNMLSGFYRPSAGQFTLGQTPLAGLPAFRIARHGVARTYQTSQ 450 G V +LIGPNGAGK+T N +SG P++G + G + IA G++R++Q + Sbjct: 381 GEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFRGQEVTGRGSRHIAGLGMSRSFQHVR 440 Query: 451 LFGSLTVTDNVALAC----GRGRLGGLLSARGFVSGEVRARCRQLLDFCGYRGALDIPSA 506 L +TV +NVA+ RG L +L + A + ++ G + + + Sbjct: 441 LMPRMTVLENVAIGAYLRGQRGVLASMLRLDRKEEARILAEAARQIERVGLKAQMYELAG 500 Query: 507 DLAHVDRRLVEIARALAADPDVLLLDEPAAGLSREDKTMLAQLLTRIAEAGISVVVVEHD 566 L+ +R++EIARALAADP +LLLDEPAAGL +K LA+LL ++ G+++++VEHD Sbjct: 501 ALSLGQQRILEIARALAADPCLLLLDEPAAGLRLGEKQALAELLRKLRGEGMAILLVEHD 560 Query: 567 MELVMQISRRIVVLDAGQRLAIGTPQEVQNDPAVRKAYLGEGTQQA 612 M+ VM++ RIVV+D GQ++A G P ++QN+PAV +AYLG ++A Sbjct: 561 MDFVMELVDRIVVMDFGQKIAEGLPADIQNNPAVLEAYLGVADEEA 606 Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 89/265 (33%), Positives = 143/265 (53%), Gaps = 22/265 (8%) Query: 611 QAVAAVRKAVSGADEL-LGVGELVTGYGAEPVLHGINLQVRQGEMIALLGANGAGKSTLM 669 QA A R+ + E+ L V + +G + ++L+V GE++AL+G NGAGKSTL Sbjct: 339 QAEALPRRPMPTPQEVVLDVRSVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLF 398 Query: 670 RSLAGLHRPVQGGIHAGGVNLMHLRAEQIVRHGVVLVPEGRQVFPELSVLDNIRLGAFLY 729 ++G+ P G + G + + I G+ + ++ P ++VL+N+ +GA+L Sbjct: 399 NQISGVDTPTSGSVQFRGQEVTGRGSRHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLR 458 Query: 730 PQ------------DVEARV-EEMLGRFPR--LRERLHHRAGLLSGGEQQMLAIARXLMS 774 Q EAR+ E + R L+ +++ AG LS G+Q++L IAR L + Sbjct: 459 GQRGVLASMLRLDRKEEARILAEAARQIERVGLKAQMYELAGALSLGQQRILEIARALAA 518 Query: 775 RPRVLLLDEPSLGL---APKVIAELFAALDQLRRENMTIVLVDQMAALALSLADRAYVIE 831 P +LLLDEP+ GL + +AEL L +LR E M I+LV+ + L DR V++ Sbjct: 519 DPCLLLLDEPAAGLRLGEKQALAEL---LRKLRGEGMAILLVEHDMDFVMELVDRIVVMD 575 Query: 832 GGRVVAQGTAAEIAANDALAKAYLG 856 G+ +A+G A+I N A+ +AYLG Sbjct: 576 FGQKIAEGLPADIQNNPAVLEAYLG 600 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 223 bits (567), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 114/232 (49%), Positives = 160/232 (68%), Gaps = 1/232 (0%) Query: 626 LLGVGELVTGYGAEPVLHGINLQVRQGEMIALLGANGAGKSTLMRSLAGLHRPVQGGIHA 685 +L ++ T YGA LHG++L V +GE++ L+GANGAGK+TL+ +L G R G + Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 686 GGVNLMHLRAEQIVRHGVVLVPEGRQVFPELSVLDNIRLGAFLYPQD-VEARVEEMLGRF 744 G ++ L+ +I+R G+ + PEGR+VFP L+VL+N+++GAF + +E +E + G F Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 121 Query: 745 PRLRERLHHRAGLLSGGEQQMLAIARXLMSRPRVLLLDEPSLGLAPKVIAELFAALDQLR 804 PRL+ER RAG +SGGEQQMLAI R LMS+PR+LLLDEP+LGLAP VIA++F + +R Sbjct: 122 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 181 Query: 805 RENMTIVLVDQMAALALSLADRAYVIEGGRVVAQGTAAEIAANDALAKAYLG 856 +T+ LV+Q A AL +ADR YV+E G VV T A + AN + KAYLG Sbjct: 182 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 16/246 (6%) Query: 366 LAADGLTMVFGGVRAVSDLGFEVPGGAVTSLIGPNGAGKTTALNMLSGFYRPSAGQFTLG 425 L D + +G + A+ + V G + +LIG NGAGKTT L L G R S+G+ Sbjct: 3 LQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIFE 62 Query: 426 QTPLAGLPAFRIARHGVARTYQTSQLFGSLTVTDNVALACGRGRLGGLLSARGFVSG--- 482 + L I R G+A + + ++F SLTV +N+ + + +V G Sbjct: 63 GQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLFP 122 Query: 483 EVRARCRQLLDFCGYRGALDIPSADLAHVDRRLVEIARALAADPDVLLLDEPAAGLSRED 542 ++ R Q + ++ +++++ I RAL + P +LLLDEP GL+ Sbjct: 123 RLKERAAQ-------------RAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLV 169 Query: 543 KTMLAQLLTRIAEAGISVVVVEHDMELVMQISRRIVVLDAGQRLAIGTPQEVQNDPAVRK 602 + ++ I E+G++V +VE + + ++ R VL+ G + T + + VRK Sbjct: 170 IAQIFDIIRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRK 229 Query: 603 AYLGEG 608 AYLG G Sbjct: 230 AYLGHG 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,374,474 Number of extensions: 102611 Number of successful extensions: 1248 Number of sequences better than 1.0e-08: 154 Number of HSP's gapped: 874 Number of HSP's successfully gapped: 280 Length of query: 858 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 765 Effective length of database: 1,179,515 Effective search space: 902328975 Effective search space used: 902328975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 135 (56.6 bits)