BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0038.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313075|ref|YP_003777167.1| gamma-glutamyltranspeptidase [H...   720   0.0  
gi|300310422|ref|YP_003774514.1| gamma-glutamyltranspeptidase [H...   119   5e-28

>gi|300313075|ref|YP_003777167.1| gamma-glutamyltranspeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 527

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/384 (90%), Positives = 369/384 (96%)

Query: 1   VPITRSQHELTRDKWDELKDQPGFAATYAADGIPAQGKVLKQSALADSLSCLAEAGLDDF 60
           +P+TRSQHELTRDKW ELKDQPGFAATYAADG+P QGKVLKQSALA SLS LAEAGLDDF
Sbjct: 144 IPVTRSQHELTRDKWSELKDQPGFAATYAADGVPPQGKVLKQSALAASLSRLAEAGLDDF 203

Query: 61  YRGDLAQRLAAGLEAAGSPVRRSDLEAFRAQVVKPLMVQLTSGRVYNLPPPTQGVSALMI 120
           YRGDLAQ LAAGL+AAGSP+RRSDLEAFRAQVV+PLMVQL+SGRVYNLPPPTQGVSALMI
Sbjct: 204 YRGDLAQSLAAGLQAAGSPLRRSDLEAFRAQVVQPLMVQLSSGRVYNLPPPTQGVSALMI 263

Query: 121 IGLFDRLGITQAEGFDHIHGLVEATKRAFILRNQHVTDPAHMSVDAAHWLLAEALEQEAK 180
           IGLFDRLG+TQA+GF H+HGLVEATKRAFILRNQHVTDPAHM VDAA WLLA AL+QE +
Sbjct: 264 IGLFDRLGVTQADGFAHLHGLVEATKRAFILRNQHVTDPAHMRVDAAQWLLAGALDQEVR 323

Query: 181 EIDMQRAAPWPHPAKPGDTIWMGAADAQGRVVSYIQSIFWEFGSGVVVPDTGIVWQNRGA 240
            IDMQRAAPWPHPA+PGDTIWMGAADAQGRVVSYIQSIFWEFGSGVVVPDTGIVWQNRGA
Sbjct: 324 HIDMQRAAPWPHPARPGDTIWMGAADAQGRVVSYIQSIFWEFGSGVVVPDTGIVWQNRGA 383

Query: 241 SFTLDDGANQLQPGKLPFHTLNPSLARLNDGRTLAYGTMGGEGQPQTQAAVFTRHVLFGQ 300
           SFTLD+G NQLQPGKLPFHTLNPSLA+L+DGRTLA+GTMGGEGQPQTQAAVFTRHVLFGQ
Sbjct: 384 SFTLDEGVNQLQPGKLPFHTLNPSLAQLDDGRTLAFGTMGGEGQPQTQAAVFTRHVLFGQ 443

Query: 301 NLQAAVSAPRWLLGRTWGDVSTNLKVEGRVPAATIDALRQAGHEVQVVEDYTDMMGHAGA 360
           NLQAAVSAPRWLLGRTWGDVSTNLK+EGR+P ATI ALR+AGHEVQVV+DY DMMGHAGA
Sbjct: 444 NLQAAVSAPRWLLGRTWGDVSTNLKLEGRIPEATIQALRRAGHEVQVVDDYADMMGHAGA 503

Query: 361 VCVHPDGLIEGATDPRADGVCAGV 384
           VCVHPDGLIEGATDPRADGVCAG+
Sbjct: 504 VCVHPDGLIEGATDPRADGVCAGL 527


>gi|300310422|ref|YP_003774514.1| gamma-glutamyltranspeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 585

 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 173/398 (43%), Gaps = 33/398 (8%)

Query: 2   PITRSQHELTRDKWDELKDQPGFAATYAADGIPAQ-GKVLKQSALADSLSCLAEAGLDDF 60
           P++RS  ++   + + L       A +  +G P Q G++L Q  LA SL  +A+ G   F
Sbjct: 189 PVSRSLAQILSAEREHLGQWDSSKAIFFKEGRPLQEGELLVQKDLAKSLRLIAKEGPKAF 248

Query: 61  YRGDLAQRLAAGLEAAGSPVRRSDLEAFRAQVVKPLMVQLTSGRVYNLPPPTQ-GVSALM 119
           Y G +A+++ A ++  G  +   DL+ ++     P+       +V ++PPP+  GV  + 
Sbjct: 249 YEGSIAKKIVAEMDKHGGLISADDLKNYKVVERVPVSGNYRGYQVMSMPPPSSGGVHIIQ 308

Query: 120 IIGLFDRLGITQ--AEGFDHIHGLVEATKRAFILRNQHVTDPAHMSVDAAHWLLAEALEQ 177
           ++ + +R  + Q  A+    IH + E  K A+  R++++ DP    V           ++
Sbjct: 309 MMNILERYPLKQYGADSAQTIHLMAETMKLAYADRSEYLGDPDFTKVPVKGLTSRAYADE 368

Query: 178 EAKEIDMQRAAP-------WPHPAKPGDTIWMGAADAQGRVVSYIQSIFWEFGSGVVVPD 230
            AK+I+  RA P        P P +   T     AD  G +V+   ++   FGSG+V   
Sbjct: 369 LAKKINPDRATPSSEIKPGQPQPYESDQTTHYSVADKDGNLVATTYTLNLNFGSGIVATG 428

Query: 231 TGIVWQNRGASFTLDDG-----------ANQLQPGKLPFHTLNPSLARLNDGRT-LAYGT 278
           TGI   N    F    G           AN + P K P  +++P+   L DG+  L  G+
Sbjct: 429 TGITLNNEMDDFAAKPGVPNAFGLVGGDANAVAPYKRPLSSMSPTFV-LKDGKPFLVTGS 487

Query: 279 MGGEGQPQTQAAVFTRHVLFGQNLQAAVSAPRWLLGRTWGDVSTNLKVEGRVPAATIDAL 338
            GG     T        +    N+  A   PR  +   W      L+VE  + A T+  L
Sbjct: 488 PGGSRIITTTLQTILNVIDHDMNVAEATITPR--IHHQWA--PDQLRVEKGLSADTLKIL 543

Query: 339 RQAGHEVQVVEDYTDMMGHAGAVCVHPDGLIEGATDPR 376
           +  G ++ V       MG    + +  DG  +G +DPR
Sbjct: 544 QDKGQKISVQPS----MGRTQTIQIRSDGF-DGFSDPR 576


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,313,323
Number of extensions: 57725
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)