BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0033.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313072|ref|YP_003777164.1| high-affinity K+ transport syst...   349   7e-98

>gi|300313072|ref|YP_003777164.1| high-affinity K+ transport system
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 730

 Score =  349 bits (896), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 177/202 (87%), Positives = 185/202 (91%), Gaps = 3/202 (1%)

Query: 1   MTTPSSNTPASSTQAVPADAIPSAAQTARWMFDPKIVKPALADSFRKLSPRVQWRNPVMF 60
           MTTPSSNT AS+T  V  +AIPSAAQTARWMFDPKIVKPALADSFRKLSPR QWRNPVMF
Sbjct: 1   MTTPSSNTSASAT--VTPEAIPSAAQTARWMFDPKIVKPALADSFRKLSPRAQWRNPVMF 58

Query: 61  VVYLGSILTTLLFIQAITGKGEAPAGFIFAVAAWLWFTVLFANFAEALAEGRSKAQAAAL 120
           VVYLGSILTTLLFIQA  G+GEAPAGFIFA+AAWLWFTVLFANFAEALAEGRSKAQAAAL
Sbjct: 59  VVYLGSILTTLLFIQAAVGQGEAPAGFIFAIAAWLWFTVLFANFAEALAEGRSKAQAAAL 118

Query: 121 RGVKKSVMAKKLRSSDQTRG-GVAAAAAQCEVVEGGSLRKGDLVLIEAGDTVPADGDVIE 179
           RGVKKSVMAKKLR +D  RG G+   A+QCEVVEG SLRKGDLVLIEAGDTVPAD +VIE
Sbjct: 119 RGVKKSVMAKKLRRADHVRGDGMQVLASQCEVVEGDSLRKGDLVLIEAGDTVPADAEVIE 178

Query: 180 GVATVDESAITGESAPVIRESG 201
           GVATVDESAITGESAPVIRESG
Sbjct: 179 GVATVDESAITGESAPVIRESG 200


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 638,682
Number of extensions: 24976
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)