BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0029.p (536 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 961 0.0 gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 106 4e-24 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 105 9e-24 gi|300310697|ref|YP_003774789.1| two component hybrid sensor his... 104 2e-23 gi|300313022|ref|YP_003777114.1| two component sensor histidine ... 97 2e-21 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/507 (94%), Positives = 486/507 (95%) Query: 30 WAVASCMATTTLAFVLDGKLHPANVIMLYLVGVMLVAMRYGRAASALVSVLSVLSFDFFF 89 WAVASC TTTLAF+LDGKLHPANVIMLYLVGVMLVAMRYGRAASALVSVLSVLSFDFFF Sbjct: 433 WAVASCAITTTLAFLLDGKLHPANVIMLYLVGVMLVAMRYGRAASALVSVLSVLSFDFFF 492 Query: 90 VDPRFSITVSDAQYLLTLAVMLAVSLFISSLTARLRRQASVAMQREGRAANLYMLGKELS 149 VDPRFSITVSDAQYLLTLAVMLAVSLFISSL ARLRRQASVAMQRE RAANLYMLGKELS Sbjct: 493 VDPRFSITVSDAQYLLTLAVMLAVSLFISSLAARLRRQASVAMQREARAANLYMLGKELS 552 Query: 150 ALLTLDQILEIGRRHLAAVFGARIAFFLPDSADQLRLAEPEQDSGGPHVLKSVDAGVAQW 209 ALLTLDQILEIGRRHLAAVFGARIAFFLPDSADQLRLAEPEQDSG HV ++VDAGVAQW Sbjct: 553 ALLTLDQILEIGRRHLAAVFGARIAFFLPDSADQLRLAEPEQDSGAAHVFRNVDAGVAQW 612 Query: 210 VYDNGQAAGKGTATLPSAAALYLPLTATMRTRGVLAFAIEGASEEERQLAAAQLALPENR 269 VYDNGQAAGKGTATLPSAAALYLPLTATMRTRGVLAFAIE SEEERQLAAAQLALPENR Sbjct: 613 VYDNGQAAGKGTATLPSAAALYLPLTATMRTRGVLAFAIEAPSEEERQLAAAQLALPENR 672 Query: 270 QMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADV 329 QMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADV Sbjct: 673 QMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADV 732 Query: 330 LAANERLDEDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELTGSAL 389 LAAN RLD+DARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEEL GSAL Sbjct: 733 LAANARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELAGSAL 792 Query: 390 RLLSKALEGRQVETRIAPDLPLLRVDAVLLERVLANLVENAIKYSPAGSPIAISAHVEDS 449 RLL+KALEGRQV+TRIAP+LPLLRVDAVLLERVLANLVENAIKYSP G+PI ISAHVE Sbjct: 793 RLLAKALEGRQVDTRIAPELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGISAHVEHG 852 Query: 450 DGQPQVKVCVSDHGRGFPPAMTQHAFEKFTRGDNESSTPGVGLGLAICRAIIEAHQGRIW 509 DG PQVKVCV D GRGFPP MTQHAFEKFTRGDNES+TPGVGLGLAICRAIIEAHQGRIW Sbjct: 853 DGAPQVKVCVMDQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIW 912 Query: 510 IAPQEAGQGATVCFMLPVETQPALPEE 536 IAPQEAGQGATVCF LPVETQPA PEE Sbjct: 913 IAPQEAGQGATVCFTLPVETQPAPPEE 939 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 21/272 (7%) Query: 265 LPENRQMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLV 324 LP+ L+ +A +E A D++ RL++ L+ +SH+LRTPL ++V Sbjct: 15 LPKTSDYLDHLPEAVARVLETQRAARRQADSVT-----RLKDEFLATLSHELRTPLNAIV 69 Query: 325 GSADVLAANERLDEDARAMARTISEQSQKMVGLM-NNLLDMARLQAGVVTLNRQWNALEE 383 G L N+ D D + E++ ++ M +LLDM+R+ AG + L + L Sbjct: 70 GWTQYLL-NDHSDADRLVKGLQVIERNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLAS 128 Query: 384 LTGSALRLLSKALEGRQVETRIAPDLP---LLRVDAVLLERVLANLVENAIKYSPAGSPI 440 + A+ + A E RQ+E + P L ++ D L++V+ NL+ NAIK++P + Sbjct: 129 VAEEAIAAVRPAAEARQIE--LHPALGQGGVILGDPARLQQVVWNLLMNAIKFTPRQGRV 186 Query: 441 AISAHVEDSDGQPQVKVCVSDHGRGFPPAMTQHAFEKFTR-----GDNESSTPGVGLGLA 495 ++S D V + VSD+GRG F++FT+ G S+ G+GLGLA Sbjct: 187 SLSLRQHDD----TVALEVSDNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLA 242 Query: 496 ICRAIIEAHQGRIWIAPQEAGQGATVCFMLPV 527 I R ++E H G+I A G GA LP+ Sbjct: 243 IARHLVELHGGQIRAASAGPGMGAAFTVTLPL 274 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 105 bits (262), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 81/261 (31%), Positives = 131/261 (50%), Gaps = 29/261 (11%) Query: 271 MLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADVL 330 ML +Q+AM +ER +E+LR ++ +SH+LRTPL L G + L Sbjct: 229 MLAQDFNQLAMTLER---------------NEKLRREFMADVSHELRTPLAILNGQLEAL 273 Query: 331 AANERLDEDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELTGSALR 390 + L DA+ + R++ + + + L+ +L D++ AG +T R L L + Sbjct: 274 E-DGVLQPDAQTL-RSLKSEVEHLNKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAA 331 Query: 391 LLSKALEGRQVETRIAPDLPL---LRVDAVLLERVLANLVENAIKYSPAGSPIAISAHVE 447 L S R + R++ +LP + DA L+++L+NL EN+++Y+ AG + + AH++ Sbjct: 332 LYSDRFSQRGM--RLSCELPASMPVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQ 389 Query: 448 DSDGQPQVKVCVSDHGRGFPPAMTQHAFEKFTR--GDNESSTPGVGLGLAICRAIIEAHQ 505 Q + D G PP + FE+F R ++ G GLGLAICR I++AHQ Sbjct: 390 ----QQHWHLVFDDSEPGVPPEVMARLFERFFRVEASRNRASGGAGLGLAICRRIVDAHQ 445 Query: 506 GRIWIAPQEAGQGATVCFMLP 526 G I + G G V +LP Sbjct: 446 GTIGASASPLG-GLRVVVVLP 465 >gi|300310697|ref|YP_003774789.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 916 Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 12/235 (5%) Query: 300 ESERLRNSLLSAISHDLRTPLTSLVGSADVLAANERLDEDARAMARTISEQSQKMVGLMN 359 E+ ++ L+ ISHDLRTPLTS++G AD++ A+ R I ++ M+ ++N Sbjct: 446 EANLAKSGFLTRISHDLRTPLTSILGFADMIQAS---GGPHAGHGRIIMRSARHMLTMVN 502 Query: 360 NLLDMAR---LQAGVVTLNRQWNALEELTGSALRLLSKALEGRQVETRIAPDLP-LLRVD 415 +L+D AR L T L+E+ L + + I+PDLP +L +D Sbjct: 503 DLIDYARGDPLDTPQPTPLYLHALLQEIAQEGQVLAQR--QHNHFTLDISPDLPPVLALD 560 Query: 416 AVLLERVLANLVENAIKYSPAGS-PIAISAHVEDSD-GQPQVKVCVSDHGRGFPPAMTQH 473 A L R+L NL++NA KY+ G + + + +D G+ +++ VSD G G P Sbjct: 561 ARRLHRILGNLLDNAAKYTREGRIGLHVQWQADHADAGKGALQIEVSDTGCGIAPQFQSR 620 Query: 474 AFEKFTRGDNESSTPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFMLPVE 528 FE F R D + PG+G+GLAI R ++ G I + + G G + LP E Sbjct: 621 IFEPFERADADRRQPGIGMGLAIVRLWVQRMGGSI-VLESQPGMGTRMHLQLPAE 674 >gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 556 Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 125/236 (52%), Gaps = 13/236 (5%) Query: 299 MESERLRNSLLSAISHDLRTPLTSLVGSADVLAANERLDEDARA-MARTISEQSQKMVGL 357 +++ + ++ LS +SH+ RTPL ++G +D L E L E A A I + +++ L Sbjct: 325 LQANQAKSRFLSNMSHEFRTPLNGVLGYSDAL--REELGESPLAQYAVAIHDSGNRLLDL 382 Query: 358 MNNLLDMARLQAGVVTLNRQWNALEELTGSAL-RLLSKA-LEGRQVETRIAPDLP-LLRV 414 +N +L++ L+ V ++ + EL G A+ R +A +G +E RI D+P +L Sbjct: 383 VNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDVPQILVC 442 Query: 415 DAVLLERVLANLVENAIKYSPAGSPIAISAHVEDSDGQPQVKVCVSDHGRGFPPAMTQHA 474 D ++RVL NL+ NA++Y+ G + VE S G Q+ + + D G G + Sbjct: 443 DERKIQRVLDNLISNAVRYTDHGR---VMVEVERS-GPQQLTMRIKDTGIGIAASQQNDI 498 Query: 475 FEKFTRGDN--ESSTPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFMLPVE 528 FEKFT+ D+ S G GLGL I + ++ G++ + E QG+T F LP++ Sbjct: 499 FEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQL-VLQSEQHQGSTFSFTLPLQ 553 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,475,066 Number of extensions: 60316 Number of successful extensions: 398 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 306 Number of HSP's successfully gapped: 44 Length of query: 536 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 446 Effective length of database: 1,193,720 Effective search space: 532399120 Effective search space used: 532399120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)