BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0021.p (254 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313540|ref|YP_003777632.1| transcription regulator protein... 154 9e-39 gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 151 5e-38 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 126 2e-30 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 69 5e-13 gi|300313741|ref|YP_003777833.1| GntR family transcription regul... 64 1e-11 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 154 bits (388), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 90/215 (41%), Positives = 127/215 (59%), Gaps = 4/215 (1%) Query: 39 IYERIVGAIMEHRLTPGTKLVEEKLAGIFSVNRTRVREVLARLAHEGLITTIPNRGAFVA 98 +Y+ I AIMEHRL P TKL E+ L I+ R VR+VLARLA EG++ NRGAF+A Sbjct: 31 MYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEANRGAFIA 90 Query: 99 SPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARASNDRRAIIRLS 158 SP+P E R++F R +LE A+L L IA LR V EE + DR IRLS Sbjct: 91 SPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEERDCYLNGDRPRWIRLS 150 Query: 159 GEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGDIIDAISAGRTE 218 +FH+ +A++ N ++ + +R+L S T L+I ++P AC+ D+H +++A+ G + Sbjct: 151 AQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEKGDIK 210 Query: 219 DAVATMLAHLHHIESVLDMSAPQGEDE-DLEALLG 252 A A M HLH E D P +D+ DL A+LG Sbjct: 211 AAQAHMAHHLHLCE---DRVRPDADDQFDLRAVLG 242 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 151 bits (381), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 87/215 (40%), Positives = 121/215 (56%) Query: 33 PLAGDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFSVNRTRVREVLARLAHEGLITTIPN 92 P + DAI I I RL PG KL EE LA ++ V+RT++R L LA + L+ IP+ Sbjct: 8 PDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPD 67 Query: 93 RGAFVASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARASNDRR 152 +GAFV+ PT EE RNIF RR LE A++R PE A L AH+ E QA + ++ + Sbjct: 68 KGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNMQ 127 Query: 153 AIIRLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGDIIDAI 212 L +FHI +A +V N V++ ++ +LA + LI +LY S AC+ ++H I A Sbjct: 128 VRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAAA 187 Query: 213 SAGRTEDAVATMLAHLHHIESVLDMSAPQGEDEDL 247 AG TE A+ M HL H+E L G +DL Sbjct: 188 RAGDTERAMELMEHHLLHVEQALAFEPKAGPRKDL 222 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 126 bits (316), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 113/201 (56%), Gaps = 5/201 (2%) Query: 39 IYERIVGAIMEHRLTPGTKLVEEKLAGIFSVNRTRVREVLARLAHEGLITTIPNRGAFVA 98 I RI AI+ +L PGT+L E++LA +F V+RT+VRE L L G++T RG FV Sbjct: 13 IAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARRGWFVI 72 Query: 99 SPTPEEARNIFAARRLLEPALLRHLCEHTRP---EHIALLRAHVAEEAQARASNDRRAII 155 PTP +AR F ARR++E LLR RP I LR H+A E A A D A Sbjct: 73 EPTPAQAREAFEARRVIELGLLRQ--ARLRPVGDTAIGQLREHIAREEAAIAGADVGARS 130 Query: 156 RLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGDIIDAISAG 215 L G+FH+ +A+ + N ++++ +R+L + T L +L+ S + +H I++A+ G Sbjct: 131 YLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIVEALERG 190 Query: 216 RTEDAVATMLAHLHHIESVLD 236 E A M HL H+ES L+ Sbjct: 191 DLEQAEQLMHDHLQHVESGLN 211 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 68.6 bits (166), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 9/198 (4%) Query: 36 GDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFSVNRTRVREVLARLAHEGLITTIPNRGA 95 +A+ E I I +L+PG L E LA F V+RT +RE L +LA G++ P RGA Sbjct: 8 AEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGA 67 Query: 96 FVASPTPEEARNIFAARRLLEPALLRHLCEHTRP-EHIALLRAHVAEEAQARASNDRRAI 154 VA P++ +F E R P EH LL AH A +A AR +ND A Sbjct: 68 IVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQA-ARDANDPDAY 126 Query: 155 IRLSGEFHIRIADMVDNPVMSK----MMRELASLTCLIIVLYDSPTVPACTHDDHGDIID 210 L+ FH I N ++ + R L L + + D + D+H ++D Sbjct: 127 FYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLK---SSFDEHQAVVD 183 Query: 211 AISAGRTEDAVATMLAHL 228 AI +G E V + H+ Sbjct: 184 AIISGDAEKTVDLLREHI 201 >gi|300313741|ref|YP_003777833.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 6/197 (3%) Query: 37 DAIYERIVGAIMEHRLTPGTKLVEEKLAGIFSVNRTRVREVLARLAHEGLITTIPNRGAF 96 + +YE + ++ + PGT+L EE LA V+RT VR L RL +GL T +G Sbjct: 6 EKVYEVLRQRLVGGQYKPGTQLKEEPLARELGVSRTPVRTALRRLVEDGLATADAGQGIH 65 Query: 97 VASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARASNDRRAIIR 156 VA+ + + F R LLEP E + +ALLR + AQA S ++ + Sbjct: 66 VAAWSDWDIEETFQLRMLLEPYAASLAAERGDEKMLALLRESNEKMAQAIKSGGLHSVEK 125 Query: 157 LSGE---FHIRIADMVDNPVMSKMMRELASLTCLI--IVLYDSPTVPACTHDDHGDIIDA 211 + FH I + +P + M+ + + ++ LY+ + H H D++ A Sbjct: 126 IQAANSIFHRTILEYSASPRLRAMLETIIDMPIIVRSFHLYEKSELEQSLH-HHQDLLLA 184 Query: 212 ISAGRTEDAVATMLAHL 228 + A E A M HL Sbjct: 185 MQARDAELARQVMQLHL 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 767,764 Number of extensions: 29021 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 9 Length of query: 254 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 171 Effective length of database: 1,226,865 Effective search space: 209793915 Effective search space used: 209793915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)