BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0018.p (263 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 237 7e-64 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 212 3e-56 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 199 2e-52 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 197 8e-52 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 196 1e-51 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 237 bits (604), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 118/260 (45%), Positives = 168/260 (64%), Gaps = 3/260 (1%) Query: 4 IELNDIVKVFKDRKRGTDMLAIDHVSLRLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPTN 63 I + + KVFK R +++A+ ++L + +F+CLLGPSGCGKSTLLN IAGF P++ Sbjct: 10 IRIQGVHKVFKTDDR--EVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSS 67 Query: 64 GVVTVAGKPITGPGADRGMVFQQANLMPWLPVWDNVAFSLKLQGKSAAERRAAAQPFIET 123 G + K ++ PG DRGMVFQ+ L PW+ V NVAF L+++G AE ++ Sbjct: 68 GQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDK 127 Query: 124 VKLKGFENHYPSELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVALW 183 + L F +P +LSGGM QRV IAR L + ++LMDEPF ALDA T+ +Q+EL+ +W Sbjct: 128 LGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIW 187 Query: 184 QRYEGTIVFVTHSVDEALILATKVAVMTHRPGRMRELIDIDLPRPRDTTTPEFNQYKRHV 243 + TIVFVTHS++EA+ LA ++ VMT+RPG ++ + ++LPR RD PEFN KR + Sbjct: 188 DEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEFNALKREL 247 Query: 244 LSLIREESALAHADAALLAA 263 L+ EE H +A + AA Sbjct: 248 GQLVMEEQQ-RHHNAEMKAA 266 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 212 bits (539), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 109/248 (43%), Positives = 156/248 (62%), Gaps = 11/248 (4%) Query: 14 KDRKRGTDMLAIDHVSLRLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPTNGVVTVAGKPI 73 +D++R + A+D VSL + F+ LG SGCGKSTLLN +AGF + G +++ G+P+ Sbjct: 14 RDKQR---VHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPV 70 Query: 74 TGPGADRGMVFQQANLMPWLPVWDNVAFSLKLQGKSAAERRAAAQPFIETVKLKGFENHY 133 +GPGA+RG+VFQ+ +L+PW V DNVA LK G S ++ R AQ + V L+ F Sbjct: 71 SGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAA 130 Query: 134 PSELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVALWQRYEGTIVFV 193 P ELSGGM QRVG+ARAL NP ++LMDEPF ALD+ T+ +MQE LV++W R + F+ Sbjct: 131 PYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFI 190 Query: 194 THSVDEALILATKVAVMTHRPGRMRELIDIDLPRPRDT--------TTPEFNQYKRHVLS 245 THS++EAL L T+V VM+ RPGR+ + D R T P F + + + + Sbjct: 191 THSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFAAGCEARAIKTEPAFAELREEIRA 250 Query: 246 LIREESAL 253 ++ + L Sbjct: 251 IVHQSEDL 258 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 199 bits (506), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/209 (52%), Positives = 145/209 (69%), Gaps = 3/209 (1%) Query: 28 VSLRLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPTNGVVTVAGKPITGPGADRGMVFQQA 87 + L + EF+CLLGPSGCGKSTLLN IAGF+ +G ++V GK + GPG DRG+VFQ + Sbjct: 25 IDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQ-DVSGEISVDGKRVKGPGLDRGVVFQSS 83 Query: 88 N-LMPWLPVWDNVAFSLKLQGKSAAERRAAAQPFIETVKLKGFENHYPSELSGGMAQRVG 146 L PWL V +NV + LKL+G ++AERRAAA+ ++ V LK + +P+ELSGGM QR Sbjct: 84 EALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQRAQ 143 Query: 147 IARALLQNPSVILMDEPFAALDAQTKMEMQEELVALWQRYEGTIVFVTHSVDEALILATK 206 IAR L+ PSV+LMDEPF ALDAQT+ +Q EL +W+ TIVFVTH + EA++LA + Sbjct: 144 IARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILLADR 203 Query: 207 VAVMTHRP-GRMRELIDIDLPRPRDTTTP 234 V MT P ++ + ++ LP PRD P Sbjct: 204 VVTMTAGPRAHIKTIEEVHLPHPRDPADP 232 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 197 bits (501), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 100/240 (41%), Positives = 147/240 (61%), Gaps = 4/240 (1%) Query: 19 GTDMLAIDHVSLRLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPTNGVVTVAGKPITGPGA 78 G +A+ S+ + + EF+ ++GP+GCGKST L++I G PT G V V G+P+ G Sbjct: 36 GRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDP 95 Query: 79 DRGMVFQQANLMPWLPVWDNVAFSLKLQGKSAAERRAAAQPFIETVKLKGFENHYPSELS 138 G VFQ + PW V +NVA +G+ A+ A A +I V L F +HYP +LS Sbjct: 96 RIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLS 155 Query: 139 GGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVALWQRYEGTIVFVTHSVD 198 GGM +RV +A+ + +P ++LMDEPF+ALD QT+ MQ+EL+ LW + G++VFVTH ++ Sbjct: 156 GGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLE 215 Query: 199 EALILATKVAVMTHRPGRMRELIDIDLPRPRDTTTPEFNQ----YKRHVLSLIREESALA 254 EA+ LA KV V+T RP ++ + IDLPRPR + Q R + + +REE +A Sbjct: 216 EAIALADKVYVLTARPATLKSVYPIDLPRPRVMEEVRYEQRFIDISRRIWADLREEVHIA 275 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 196 bits (499), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 105/265 (39%), Positives = 161/265 (60%), Gaps = 10/265 (3%) Query: 3 FIELNDIVKVFKDRKRGTDMLAIDHVSLRLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPT 62 FI+++ + +F +K A+ ++L + K EF+ L+G SGCGKSTLLN+IAG P+ Sbjct: 10 FIDIHGVEMLFHTKK--GVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPS 67 Query: 63 NGVVTVAGKPITGPGADRGMVFQQANLMPWLPVWDNVAFSLKLQGKSAAER---RAAAQP 119 GV+ A + I GP +R +VFQ +L+PWL ++N+ ++ + R R + Sbjct: 68 EGVLLCANREIGGPAPERAVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRA 127 Query: 120 FIETVKLKGFENHYPSELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEEL 179 + V L EN P+E+SGGM QRVGIARAL P V+LMDEPF ALDA T+ +Q+EL Sbjct: 128 ALALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDEL 187 Query: 180 VALWQRYEGTIVFVTHSVDEALILATKVAVMTHRP-GRMRELIDIDLPRPRDTTT----P 234 + + + + T+V VTH VDEA++L+ ++ +MT+ P + E++++ L RPRD P Sbjct: 188 LKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVKLARPRDRVVLAQDP 247 Query: 235 EFNQYKRHVLSLIREESALAHADAA 259 E+ QY+ VL + + A +AA Sbjct: 248 EYGQYRTAVLEFLYRKQAHPAREAA 272 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 780,860 Number of extensions: 31785 Number of successful extensions: 460 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 315 Number of HSP's successfully gapped: 126 Length of query: 263 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 180 Effective length of database: 1,226,865 Effective search space: 220835700 Effective search space used: 220835700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)